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NM_002968.3(SALL1):c.477_478insAGCAGCGGC (p.Ser159_Gly160insSerSerGly) AND not provided

Germline classification:
Uncertain significance (1 submission)
Last evaluated:
Mar 25, 2022
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002285382.2

Allele description [Variation Report for NM_002968.3(SALL1):c.477_478insAGCAGCGGC (p.Ser159_Gly160insSerSerGly)]

NM_002968.3(SALL1):c.477_478insAGCAGCGGC (p.Ser159_Gly160insSerSerGly)

Gene:
SALL1:spalt like transcription factor 1 [Gene - OMIM - HGNC]
Variant type:
Insertion
Cytogenetic location:
16q12.1
Genomic location:
Preferred name:
NM_002968.3(SALL1):c.477_478insAGCAGCGGC (p.Ser159_Gly160insSerSerGly)
HGVS:
  • NC_000016.10:g.51141746_51141747insCGCTGCTGC
  • NG_007990.1:g.14527_14528GCA[2]GCGGC[1]
  • NM_001127892.2:c.186_187insAGCAGCGGC
  • NM_002968.3:c.477_478insAGCAGCGGCMANE SELECT
  • NP_001121364.1:p.Ser62_Gly63insSerSerGly
  • NP_002959.2:p.Gly160_Gly161insSerSerGly
  • NP_002959.2:p.Ser159_Gly160insSerSerGly
  • LRG_674t1:c.477_478insAGCAGCGGC
  • LRG_674:g.14527_14528GCA[2]GCGGC[1]
  • LRG_674p1:p.Gly160_Gly161insSerSerGly
  • NC_000016.9:g.51175657_51175658insCGCTGCTGC
  • NM_002968.2:c.477_478insAGCAGCGGC
Links:
dbSNP: rs1555475415
NCBI 1000 Genomes Browser:
rs1555475415
Molecular consequence:
  • NM_001127892.2:c.186_187insAGCAGCGGC - inframe_insertion - [Sequence Ontology: SO:0001821]
  • NM_002968.3:c.477_478insAGCAGCGGC - inframe_insertion - [Sequence Ontology: SO:0001821]

Condition(s)

Synonyms:
none provided
Identifiers:
MedGen: C3661900

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Assertion and evidence details

Help
Submission AccessionSubmitterReview Status
(Assertion method)		Clinical Significance
(Last evaluated)		OriginMethodCitations
SCV002575635GeneDx
criteria provided, single submitter

(GeneDx Variant Classification Process June 2021)		Uncertain significance
(Mar 25, 2022) 		germlineclinical testing

Citation Link

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Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineyesnot providednot providednot providednot providednot providedclinical testing

Details of each submission

From GeneDx, SCV002575635.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testingnot provided

Description

Not observed at significant frequency in large population cohorts (gnomAD); In-frame insertion of 3 amino acids in a repetitive region with no known function; Has not been previously published as pathogenic or benign to our knowledge

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineyesnot providednot providednot providednot providednot providednot providednot provided

Last Updated: Mar 30, 2024