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NM_001943.5(DSG2):c.2955del (p.Val986fs) AND Cardiovascular phenotype

Germline classification:
Likely pathogenic (1 submission)
Last evaluated:
Nov 30, 2018
Review status:
1 star out of maximum of 4 stars
criteria provided, single submitter
Somatic classification
of clinical impact:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Somatic classification
of oncogenicity:
None
Review status:
(0/4) 0 stars out of maximum of 4 stars
no assertion criteria provided
Record status:
current
Accession:
RCV002436539.2

Allele description [Variation Report for NM_001943.5(DSG2):c.2955del (p.Val986fs)]

NM_001943.5(DSG2):c.2955del (p.Val986fs)

Genes:
DSG2-AS1:DSG2 antisense RNA 1 [Gene - HGNC]
DSG2:desmoglein 2 [Gene - OMIM - HGNC]
Variant type:
Deletion
Cytogenetic location:
18q12.1
Genomic location:
Preferred name:
NM_001943.5(DSG2):c.2955del (p.Val986fs)
HGVS:
  • NC_000018.10:g.31546341del
  • NG_007072.3:g.53100del
  • NM_001943.5:c.2955delMANE SELECT
  • NP_001934.2:p.Val986fs
  • LRG_397t1:c.2955del
  • LRG_397:g.53100del
  • NC_000018.9:g.29126303del
  • NC_000018.9:g.29126304del
  • NM_001943.3:c.2955del
  • NM_001943.3:c.2955delT
Protein change:
V986fs
Links:
dbSNP: rs1064794709
NCBI 1000 Genomes Browser:
rs1064794709
Molecular consequence:
  • NM_001943.5:c.2955del - frameshift variant - [Sequence Ontology: SO:0001589]

Condition(s)

Name:
Cardiovascular phenotype
Identifiers:
MedGen: CN230736

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Assertion and evidence details

Submission AccessionSubmitterReview Status
(Assertion method)
Clinical Significance
(Last evaluated)
OriginMethodCitations
SCV002750175Ambry Genetics
criteria provided, single submitter

(Ambry Variant Classification Scheme 2023)
Likely pathogenic
(Nov 30, 2018)
germlineclinical testing

PubMed (5)
[See all records that cite these PMIDs]

Citation Link

Summary from all submissions

EthnicityOriginAffectedIndividualsFamiliesChromosomes testedNumber TestedFamily historyMethod
not providedgermlineunknownnot providednot providednot providednot providednot providedclinical testing

Citations

PubMed

Wide spectrum of desmosomal mutations in Danish patients with arrhythmogenic right ventricular cardiomyopathy.

Christensen AH, Benn M, Bundgaard H, Tybjaerg-Hansen A, Haunso S, Svendsen JH.

J Med Genet. 2010 Nov;47(11):736-44. doi: 10.1136/jmg.2010.077891. Epub 2010 Sep 23.

PubMed [citation]
PMID:
20864495

Population-prevalent desmosomal mutations predisposing to arrhythmogenic right ventricular cardiomyopathy.

Lahtinen AM, Lehtonen E, Marjamaa A, Kaartinen M, Heliƶ T, Porthan K, Oikarinen L, Toivonen L, Swan H, Jula A, Peltonen L, Palotie A, Salomaa V, Kontula K.

Heart Rhythm. 2011 Aug;8(8):1214-21. doi: 10.1016/j.hrthm.2011.03.015. Epub 2011 Mar 10.

PubMed [citation]
PMID:
21397041
See all PubMed Citations (5)

Details of each submission

From Ambry Genetics, SCV002750175.2

#EthnicityIndividualsChromosomes TestedFamily HistoryMethodCitations
1not providednot providednot providednot providedclinical testing PubMed (5)

Description

The c.2955delT variant, located in coding exon 15 of the DSG2 gene, results from a deletion of one nucleotide at nucleotide position 2955, causing a translational frameshift with a predicted alternate stop codon (p.V986Wfs*6). Frameshifts are typically deleterious in nature, however, this frameshift occurs at the 3' terminus of DSG2, is not expected to trigger nonsense-mediated mRNA decay, and impacts only the last 133 amino acids of the protein. The exact functional impact of these altered amino acids is unknown at this time; however, downstream truncations have been reported in individuals with arrhythmogenic right ventricular cardiomyopathy (ARVC) (Christensen AH et al. J. Med. Genet., 2010 Nov;47:736-44; Lahtinen AM et al. Heart Rhythm, 2011 Aug;8:1214-21; Rasmussen TB et al. Hum. Mutat., 2013 May;34:697-705; Baskin B et al. Hum. Genet., 2013 Nov;132:1245-52). This variant was seen in an exome cohort, but cardiovascular history was not provided (Thompson ML et al. Genet. Med., 2018 Apr;[Epub ahead of print]). Based on the majority of available evidence to date, this variant is likely to be pathogenic.

#SampleMethodObservation
OriginAffectedNumber testedTissuePurposeMethodIndividualsAllele frequencyFamiliesCo-occurrences
1germlineunknownnot providednot providednot providednot providednot providednot providednot provided

Last Updated: May 7, 2024