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NM_000314.8(PTEN):c.802-5_802-3del

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Interpretation:
Benign/Likely benign​

Review status:
criteria provided, multiple submitters, no conflicts
Submissions:
2 (Most recent: Nov 30, 2020)
Last evaluated:
May 28, 2019
Accession:
VCV000229656.4
Variation ID:
229656
Description:
3bp deletion
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NM_000314.8(PTEN):c.802-5_802-3del

Allele ID
233862
Variant type
Deletion
Variant length
3 bp
Cytogenetic location
10q23.31
Genomic location
10: 87960877-87960879 (GRCh38) GRCh38 UCSC
10: 89720634-89720636 (GRCh37) GRCh37 UCSC
HGVS
Nucleotide Protein Molecular
consequence
NC_000010.10:g.89720646_89720648del
NC_000010.11:g.87960889_87960891del
NM_000314.8:c.802-5_802-3del MANE Select
... more HGVS
Protein change
-
Other names
-
Canonical SPDI
NC_000010.11:87960876:TTTTTTTTTTTTTTT:TTTTTTTTTTTT
Functional consequence
-
Global minor allele frequency (GMAF)
-

Allele frequency
-
Links
ClinGen: CA060642
dbSNP: rs34003473
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Aggregate interpretations per condition

Interpreted condition Interpretation Number of submissions Review status Last evaluated Variation/condition record
Likely benign 1 criteria provided, single submitter Sep 12, 2013 RCV000219547.1
Benign 1 criteria provided, single submitter May 28, 2019 RCV000988423.1
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Gene OMIM ClinGen Gene Dosage Sensitivity Curation Variation viewer Related variants
HI score Help TS score Help Within gene All
PTEN Sufficient evidence for dosage pathogenicity No evidence available GRCh38
GRCh38
GRCh37
1948 2185

Submitted interpretations and evidence

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Interpretation
(Last evaluated)
Review status
(Assertion criteria)
Condition
(Inheritance)
Submitter Supporting information
Benign
(May 28, 2019)
criteria provided, single submitter
Method: clinical testing
None
Allele origin: unknown
Mendelics
Accession: SCV001138139.1
Submitted: (Oct 22, 2019)
Evidence details
Likely benign
(Sep 12, 2013)
criteria provided, single submitter
Method: clinical testing
Hereditary cancer-predisposing syndrome
Allele origin: germline
Ambry Genetics
Accession: SCV000272938.5
Submitted: (Nov 30, 2020)
Evidence details
Comment:
This alteration is classified as likely benign based on a combination of the following: population frequency, intact protein function, lack of segregation with disease, co-occurrence, … (more)

Functional evidence

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There is no functional evidence in ClinVar for this variation. If you have generated functional data for this variation, please consider submitting that data to ClinVar.

Citations for this variant

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There are no citations in ClinVar for this variation. If you know of citations for this variation, please consider submitting that information to ClinVar.

Text-mined citations for rs34003473...

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These citations are identified by LitVar using the rs number, so they may include citations for more than one variant at this location. Please review the LitVar results carefully for your variant of interest.

Record last updated Apr 08, 2021