| | CNPY3, CNPY3-GNMT (A8P +1 more) | Single nucleotide variant (missense variant +2 more) | not specified | |
| | CNPY3, CNPY3-GNMT (G127R +2 more) | Single nucleotide variant (missense variant +2 more) | Developmental and epileptic encephalopathy, 60 | |
| | | Copy number loss | not specified | |
| | CNPY3, CNPY3-GNMT (L22del +1 more) | Microsatellite (inframe deletion +3 more) | CNPY3-related disorder | |
| | CNPY3, CNPY3-GNMT (A131T +2 more) | Single nucleotide variant (missense variant +2 more) | CNPY3-related disorder | |
| | | Microsatellite (inframe insertion +3 more) | CNPY3-related disorder | |
| | | Single nucleotide variant (synonymous variant +2 more) | CNPY3-related disorder | |
| | CNPY3, CNPY3-GNMT (L19P +1 more) | Single nucleotide variant (missense variant +2 more) | not specified | |
| | | Single nucleotide variant (missense variant +2 more) | Developmental and epileptic encephalopathy, 60 | |
| | | Microsatellite (inframe_deletion +3 more) | not provided +1 more | GConflicting classifications of pathogenicity |
| | CNPY3, CNPY3-GNMT (R116T +2 more) | Single nucleotide variant (missense variant +3 more) | not specified | |
| | CNPY3, CNPY3-GNMT (N183fs +2 more) | Deletion (frameshift variant +2 more) | Developmental and epileptic encephalopathy, 60 | |
| | | Single nucleotide variant (splice donor variant +1 more) | Developmental and epileptic encephalopathy, 60 | |
| | | Deletion | not provided | |
| | | Duplication | PRPH2-related disorder | |
| | | Deletion | Peroxisome biogenesis disorder | |
| | CNPY3, CNPY3-GNMT (G118S +2 more) | Single nucleotide variant (missense variant +3 more) | not specified | |
| | CNPY3, CNPY3-GNMT (L23P +1 more) | Single nucleotide variant (missense variant +2 more) | not specified | |
| | CNPY3, CNPY3-GNMT (A267P +2 more) | Single nucleotide variant (missense variant +2 more) | not specified | |
| | CNPY3, CNPY3-GNMT (L25P +1 more) | Single nucleotide variant (missense variant +2 more) | not specified | |
| | CNPY3, CNPY3-GNMT (S264C +2 more) | Single nucleotide variant (missense variant +2 more) | not specified | |
| | CNPY3, CNPY3-GNMT (V109M +2 more) | Single nucleotide variant (missense variant +2 more) | Developmental and epileptic encephalopathy, 60 | |
| | | Single nucleotide variant (synonymous variant +2 more) | not provided | |
| | | Single nucleotide variant (synonymous variant +2 more) | not provided | |
| | | Copy number gain | not provided | |
| | CNPY3, CNPY3-GNMT (E131K +2 more) | Single nucleotide variant (missense variant +3 more) | not specified +1 more | |
| | CNPY3-GNMT, CNPY3 (G246S +2 more) | Single nucleotide variant (missense variant +2 more) | Developmental and epileptic encephalopathy, 60 | |
| | | Single nucleotide variant (missense variant +1 more) | Developmental and epileptic encephalopathy, 60 | |
| | CNPY3, CNPY3-GNMT (K136R +2 more) | Single nucleotide variant (missense variant +2 more) | Developmental and epileptic encephalopathy, 60 | |
| | | Single nucleotide variant (missense variant +2 more) | not specified +1 more | |
| | | Single nucleotide variant (missense variant +2 more) | not provided | |
| | | Single nucleotide variant (synonymous variant +2 more) | not provided | |
| | CNPY3, CNPY3-GNMT (Q245fs +2 more) | Deletion (frameshift variant +2 more) | Developmental and epileptic encephalopathy, 60 | |
| | CNPY3-GNMT, CNPY3 (R154Q +2 more) | Single nucleotide variant (non-coding transcript variant +3 more) | Developmental and epileptic encephalopathy, 60 | |
| | CNPY3, CNPY3-GNMT (Q210* +2 more) | Single nucleotide variant (nonsense +2 more) | Developmental and epileptic encephalopathy, 60 | |
| | | Duplication | Peroxisome biogenesis disorder | |
| | | Deletion (splice acceptor variant +1 more) | not specified | |
| | | Copy number gain | not provided | |
| | | Copy number gain | not provided | |
| | | Copy number gain | not provided | |
| | | Single nucleotide variant (splice donor variant +1 more) | Developmental and epileptic encephalopathy, 60 | |
| | | Duplication (nonsense +2 more) | Developmental and epileptic encephalopathy, 60 | |
| | CNPY3, CNPY3-GNMT (G125R +2 more) | Single nucleotide variant (missense variant +2 more) | Developmental and epileptic encephalopathy, 60 | |
| | | Copy number gain | See cases | |
| | | Copy number gain | See cases | |
| | ANKRD66, C6orf201 +2580 more | Copy number gain | See cases | |
| | LOC123620117, LOC123620118 +324 more | Copy number loss | See cases | |
| | | Copy number loss | See cases | |
| | LOC132089385, LOC132089386 +221 more | Copy number loss | See cases | |