microbigge

Convert MicroBIGG-E Data Report into an Excel workbook

microbigge

Convert MicroBIGG-E Data Report into an Excel workbook

Name

dataformat excel microbigge - Convert MicroBIGG-E Data Report into an Excel workbook

Synopsis

dataformat excel microbigge [flags]

Description

Convert MicroBIGG-E Data Report into an Excel workbook.

Refer to NCBI’s command line start documentation for information about getting started with the command-line tools.

Examples

  dataformat excel microbigge --inputfile pathogen_package/ncbi_dataset/data/data_report.jsonl --outputfile pathogen.xlsx
  dataformat excel microbigge --package van.zip --outputfile van.xlsx

Options

      --fields strings      comma-separated list of fields
  -h, --help                help for microbigge
      --inputfile string    input file
  -o, --outputfile string   Excel workbook file
      --package string      datasets package (zip archive), inputfile parameter is relative to the root path inside the archive

Fields

MnemonicName
amr-methodAMR method
classClass
is-plusIs plus
subclassSubclass
subtypeSubtype
target-accessionTarget accession
typeType
Generated October 22, 2021