prok-gene

Convert Prokaryote Gene Report into an Excel workbook

prok-gene

Convert Prokaryote Gene Report into an Excel workbook

Name

dataformat excel prok-gene - Convert Prokaryote Gene Report into an Excel workbook

Synopsis

dataformat excel prok-gene [flags]

Description

Convert Prokaryote Gene Report into an Excel workbook.

Refer to NCBI’s command line start documentation for information about getting started with the command-line tools.

Examples

  dataformat excel prok-gene --inputfile prokaryote_package/ncbi_dataset/data/data_report.jsonl --outputfile prokaryote.xlsx
  dataformat excel prok-gene --package prokaryote-package.zip --outputfile prokaryote.xlsx

Options

      --fields strings      comma-separated list of fields
  -h, --help                help for prok-gene
      --inputfile string    input file
  -o, --outputfile string   Excel workbook file
      --package string      datasets package (zip archive), inputfile parameter is relative to the root path inside the archive

Fields

MnemonicName
accessionAccession
descriptionDescription
ec-numberEC Number
gene-symbolGene Symbol
mapping-countNumber of Genome Mappings
name-evidence-accessionProtein Name EvidenceAccession
name-evidence-categoryProtein Name EvidenceCategory
name-evidence-sourceProtein Name EvidenceSource
protein-lengthProtein Length
protein-nameProtein Name
Generated October 22, 2021