microbigge

Convert MicroBIGG-E Data Report into TSV format

microbigge

Convert MicroBIGG-E Data Report into TSV format

Name

dataformat tsv microbigge - Convert MicroBIGG-E Data Report into TSV format

Synopsis

dataformat tsv microbigge [flags]

Description

Convert MicroBIGG-E Data Report into TSV format.

Refer to NCBI’s command line start documentation for information about getting started with the command-line tools.

Examples

  dataformat tsv microbigge --inputfile pathogen_package/ncbi_dataset/data/data_report.jsonl
  dataformat tsv microbigge --package virus-sars2-refseq.zip

Options

      --elide-header       Do not output header
      --fields strings     comma-separated list of fields
  -h, --help               help for microbigge
      --inputfile string   input file
      --package string     datasets package (zip archive), inputfile parameter is relative to the root path inside the archive

Fields

MnemonicName
amr-methodAMR method
classClass
is-plusIs plus
subclassSubclass
subtypeSubtype
target-accessionTarget accession
typeType
Generated October 22, 2021