accession

print a summary of a genome dataset by assembly accession

accession

print a summary of a genome dataset by assembly accession

Name

datasets summary genome accession - print a summary of a genome dataset by assembly accession

Synopsis

datasets summary genome accession <accession ...> [flags]

Description

Print a summary of a genome dataset by NCBI Assembly or BioProject accession. The summary is returned in JSON format.

Refer to NCBI’s command line quickstart documentation for information about getting started with the command-line tools.

Examples

  datasets summary genome accession GCF_000001405.39
  datasets summary genome accession GCA_003774525.2 GCA_000001635
  datasets summary genome accession PRJNA31257

Options

  -a, --annotated                only include genomes with annotation
      --api-key string           NCBI Datasets API Key
      --as-json-lines            Stream results as newline delimited JSON-Lines
      --assembly-level string    restrict assemblies to a comma-separated list of one or more of: chromosome, complete_genome, contig, scaffold
      --assembly-source string   restrict assemblies to refseq or genbank only
      --assmaccs                 return only assembly accessions
  -h, --help                     help for accession
      --inputfile string         read a list of NCBI Assembly or BioProject accessions from a file to use as input
      --limit string             limit the number of genome summaries returned
                                 * "all": returns all matching genome summaries
                                 * "none": returns only the number of matching genome summaries
                                 * a number: returns the specified number of matching genome summaries
                                  (default "all")
      --no-progressbar           hide progress bar
      --reference                limit to reference and representative (GCF_ and GCA_) assemblies
      --released-before string   only include genomes that have been released before a specified date (MM/DD/YYYY)
      --released-since string    only include genomes that have been released after a specified date (MM/DD/YYYY)
      --search strings           only include genomes that have the specified text in the
                                 searchable fields: species and infraspecies, assembly name and submitter
                                 To provide multiple strings '--search' can be included multiple times
Generated October 22, 2021