genome

Name

datasets summary genome - Print a data report containing genome metadata

Synopsis

datasets summary genome [flags]

Description

Print a data report containing genome metadata. The data report is returned in JSON format.

Examples

  datasets summary genome accession GCF_000001405.40
  datasets summary genome taxon "mus musculus"
  datasets summary genome taxon human --assembly-level chromosome,complete
  datasets summary genome taxon "mus musculus" --search C57BL/6J --search "Broad Institute"

Options

      --annotated                Limit to annotated genomes
      --api-key string           Specify an NCBI API key
      --as-json-lines            Output results in JSON Lines format
      --assembly-level string    Limit to genomes at one or more assembly levels (comma-separated):
                                   * chromosome
                                   * complete
                                   * contig
                                   * scaffold
                                    (default "[]")
      --assembly-source string   Limit to 'RefSeq' (GCF_) or 'GenBank' (GCA_) genomes (default "all")
      --debug                    Emit debugging info
      --exclude-atypical         Exclude atypical assemblies
      --help                     Print detailed help about a datasets command
      --limit string             Limit the number of genome summaries returned
                                   * all:      returns all matching genome summaries
                                   * a number: returns the specified number of matching genome summaries
                                      (default "all")
      --mag string               Limit to metagenome assembled genomes (only) or remove them from the results (exclude) (default "all")
      --reference                Limit to reference genomes
      --released-after string    Limit to genomes released on or after a specified date (MM/DD/YYYY)
      --released-before string   Limit to genomes released on or before a specified date (MM/DD/YYYY)
      --report string            Choose the output type:
                                   * genome:   Retrieve the primary genome report
                                   * sequence: Retrieve the sequence report
                                   * ids_only: Retrieve only the genome identifiers
                                    (default "genome")
      --search strings           Limit results to genomes with specified text in the searchable fields:
                                 species and infraspecies, assembly name and submitter.
                                 To search multiple strings, use the flag multiple times.
      --version                  Print version of datasets

Commands