nstd107 (John et al. 2014)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Prashantha Hebbar
- Submitter URL:
- http://0-www-sciencedirect-com.brum.beds.ac.uk/science/article/pii/S2213596014001299
- Description:
- Comprehensive analysis of a personal genome of Bedouin ancestry from Kuwait. See Variant Summary counts for nstd107 in dbVar Variant Summary.
- Project:
- PRJNA245931
- Publication(s):
- John et al. 2014
Detailed Information: Download 8440 Variant Regions, Download 8440 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Submitted: GRCh37 (hg19)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 628 | 628 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 728 | 728 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 463 | 463 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 568 | 568 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 441 | 441 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 428 | 428 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 634 | 634 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 428 | 428 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 505 | 505 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 477 | 477 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 375 | 375 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 330 | 330 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 261 | 261 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 263 | 263 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 316 | 316 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 333 | 333 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 298 | 298 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 251 | 251 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 308 | 308 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 240 | 240 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 237 | 237 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 210 | 210 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 412 | 412 | Remapped | NC_000023.11 |
| NC_000024.10 | ChrY | 158 | 158 | Remapped | NC_000024.10 |
| NT_187513.1 | Unplaced|NT_187513.1 | 7 | 7 | Remapped | NT_187513.1 |
| NT_187361.1 | Chr1|NT_187361.1 | 8 | 8 | Remapped | NT_187361.1 |
| NT_187364.1 | Chr1|NT_187364.1 | 1 | 1 | Remapped | NT_187364.1 |
| NT_187515.1 | Chr1|NT_187515.1 | 8 | 8 | Remapped | NT_187515.1 |
| NT_187516.1 | Chr1|NT_187516.1 | 2 | 2 | Remapped | NT_187516.1 |
| NT_187517.1 | Chr1|NT_187517.1 | 1 | 1 | Remapped | NT_187517.1 |
| NT_187518.1 | Chr1|NT_187518.1 | 1 | 1 | Remapped | NT_187518.1 |
| NT_187519.1 | Chr1|NT_187519.1 | 2 | 2 | Remapped | NT_187519.1 |
| NT_187520.1 | Chr1|NT_187520.1 | 6 | 6 | Remapped | NT_187520.1 |
| NT_187646.1 | Chr1|NT_187646.1 | 1 | 1 | Remapped | NT_187646.1 |
| NW_003315906.1 | Chr1|NW_003315906.1 | 1 | 1 | Remapped | NW_003315906.1 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 2 | 2 | Remapped | NW_011332687.1 |
| NW_011332688.1 | Chr1|NW_011332688.1 | 4 | 4 | Remapped | NW_011332688.1 |
| NW_014040926.1 | Chr1|NW_014040926.1 | 2 | 2 | Remapped | NW_014040926.1 |
| NW_014040927.1 | Chr1|NW_014040927.1 | 1 | 1 | Remapped | NW_014040927.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 4 | 4 | Remapped | NW_017852928.1 |
| NW_018654706.1 | Chr1|NW_018654706.1 | 1 | 1 | Remapped | NW_018654706.1 |
| NT_187522.1 | Chr2|NT_187522.1 | 1 | 1 | Remapped | NT_187522.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 2 | 2 | Remapped | NT_187523.1 |
| NT_187524.1 | Chr2|NT_187524.1 | 1 | 1 | Remapped | NT_187524.1 |
| NT_187525.1 | Chr2|NT_187525.1 | 3 | 3 | Remapped | NT_187525.1 |
| NT_187526.1 | Chr2|NT_187526.1 | 1 | 1 | Remapped | NT_187526.1 |
| NT_187527.1 | Chr2|NT_187527.1 | 3 | 3 | Remapped | NT_187527.1 |
| NT_187528.1 | Chr2|NT_187528.1 | 4 | 4 | Remapped | NT_187528.1 |
| NT_187529.1 | Chr2|NT_187529.1 | 3 | 3 | Remapped | NT_187529.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 2 | 2 | Remapped | NT_187647.1 |
| NT_187648.1 | Chr2|NT_187648.1 | 5 | 5 | Remapped | NT_187648.1 |
| NW_011332689.1 | Chr2|NW_011332689.1 | 5 | 5 | Remapped | NW_011332689.1 |
| NW_011332690.1 | Chr2|NW_011332690.1 | 1 | 1 | Remapped | NW_011332690.1 |
| NW_012132915.1 | Chr2|NW_012132915.1 | 3 | 3 | Remapped | NW_012132915.1 |
| NW_018654710.1 | Chr2|NW_018654710.1 | 1 | 1 | Remapped | NW_018654710.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 8 | 8 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 8 | 8 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 8 | 8 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 8 | 8 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 8 | 8 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 6 | 6 | Remapped | NT_187532.1 |
| NT_187537.1 | Chr3|NT_187537.1 | 1 | 1 | Remapped | NT_187537.1 |
| NT_187538.1 | Chr3|NT_187538.1 | 1 | 1 | Remapped | NT_187538.1 |
| NT_187539.1 | Chr3|NT_187539.1 | 4 | 4 | Remapped | NT_187539.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 8 | 8 | Remapped | NT_187649.1 |
| NW_009646197.1 | Chr3|NW_009646197.1 | 1 | 1 | Remapped | NW_009646197.1 |
| NW_009646198.1 | Chr3|NW_009646198.1 | 1 | 1 | Remapped | NW_009646198.1 |
| NW_012132916.1 | Chr3|NW_012132916.1 | 1 | 1 | Remapped | NW_012132916.1 |
| NW_018654711.1 | Chr3|NW_018654711.1 | 1 | 1 | Remapped | NW_018654711.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 14 | 14 | Remapped | NT_187679.1 |
| NT_113793.3 | Chr4|NT_113793.3 | 6 | 6 | Remapped | NT_113793.3 |
| NT_187540.1 | Chr4|NT_187540.1 | 2 | 2 | Remapped | NT_187540.1 |
| NT_187542.1 | Chr4|NT_187542.1 | 1 | 1 | Remapped | NT_187542.1 |
| NT_187543.1 | Chr4|NT_187543.1 | 10 | 10 | Remapped | NT_187543.1 |
| NT_187544.1 | Chr4|NT_187544.1 | 1 | 1 | Remapped | NT_187544.1 |
| NT_187545.1 | Chr4|NT_187545.1 | 1 | 1 | Remapped | NT_187545.1 |
| NT_187650.1 | Chr4|NT_187650.1 | 11 | 11 | Remapped | NT_187650.1 |
| NT_187547.1 | Chr5|NT_187547.1 | 5 | 5 | Remapped | NT_187547.1 |
| NT_187548.1 | Chr5|NT_187548.1 | 2 | 2 | Remapped | NT_187548.1 |
| NT_187550.1 | Chr5|NT_187550.1 | 2 | 2 | Remapped | NT_187550.1 |
| NT_187551.1 | Chr5|NT_187551.1 | 1 | 1 | Remapped | NT_187551.1 |
| NT_187651.1 | Chr5|NT_187651.1 | 1 | 1 | Remapped | NT_187651.1 |
| NT_187652.1 | Chr5|NT_187652.1 | 2 | 2 | Remapped | NT_187652.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 3 | 3 | Remapped | NW_003315917.2 |
| NW_003315918.1 | Chr5|NW_003315918.1 | 1 | 1 | Remapped | NW_003315918.1 |
| NW_003315920.1 | Chr5|NW_003315920.1 | 1 | 1 | Remapped | NW_003315920.1 |
| NW_009646199.1 | Chr5|NW_009646199.1 | 2 | 2 | Remapped | NW_009646199.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 1 | 1 | Remapped | NW_016107298.1 |
| NW_018654712.1 | Chr5|NW_018654712.1 | 2 | 2 | Remapped | NW_018654712.1 |
| NT_187553.1 | Chr6|NT_187553.1 | 7 | 7 | Remapped | NT_187553.1 |
| NT_187556.1 | Chr6|NT_187556.1 | 1 | 1 | Remapped | NT_187556.1 |
| NT_187557.1 | Chr6|NT_187557.1 | 2 | 2 | Remapped | NT_187557.1 |
| NW_004166862.2 | Chr6|NW_004166862.2 | 1 | 1 | Remapped | NW_004166862.2 |
| NW_012132918.1 | Chr6|NW_012132918.1 | 1 | 1 | Remapped | NW_012132918.1 |
| NW_013171802.1 | Chr6|NW_013171802.1 | 1 | 1 | Remapped | NW_013171802.1 |
| NW_018654713.1 | Chr6|NW_018654713.1 | 1 | 1 | Remapped | NW_018654713.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 4 | 4 | Remapped | NT_187558.1 |
| NT_187560.1 | Chr7|NT_187560.1 | 8 | 8 | Remapped | NT_187560.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 2 | 2 | Remapped | NT_187562.1 |
| NT_187564.1 | Chr7|NT_187564.1 | 1 | 1 | Remapped | NT_187564.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 6 | 6 | Remapped | NT_187653.1 |
| NW_012132919.1 | Chr7|NW_012132919.1 | 1 | 1 | Remapped | NW_012132919.1 |
| NW_017852929.1 | Chr7|NW_017852929.1 | 1 | 1 | Remapped | NW_017852929.1 |
| NW_017852930.1 | Chr7|NW_017852930.1 | 2 | 2 | Remapped | NW_017852930.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 11 | 11 | Remapped | NW_018654714.1 |
| NW_018654715.1 | Chr7|NW_018654715.1 | 1 | 1 | Remapped | NW_018654715.1 |
| NT_187680.1 | Chr8|NT_187680.1 | 5 | 5 | Remapped | NT_187680.1 |
| NT_187565.1 | Chr8|NT_187565.1 | 6 | 6 | Remapped | NT_187565.1 |
| NT_187566.1 | Chr8|NT_187566.1 | 1 | 1 | Remapped | NT_187566.1 |
| NT_187568.1 | Chr8|NT_187568.1 | 5 | 5 | Remapped | NT_187568.1 |
| NT_187569.1 | Chr8|NT_187569.1 | 1 | 1 | Remapped | NT_187569.1 |
| NT_187570.1 | Chr8|NT_187570.1 | 1 | 1 | Remapped | NT_187570.1 |
| NT_187571.1 | Chr8|NT_187571.1 | 1 | 1 | Remapped | NT_187571.1 |
| NT_187572.1 | Chr8|NT_187572.1 | 3 | 3 | Remapped | NT_187572.1 |
| NT_187573.1 | Chr8|NT_187573.1 | 1 | 1 | Remapped | NT_187573.1 |
| NT_187574.1 | Chr8|NT_187574.1 | 1 | 1 | Remapped | NT_187574.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 18 | 18 | Remapped | NT_187576.1 |
| NT_187577.1 | Chr8|NT_187577.1 | 4 | 4 | Remapped | NT_187577.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 4 | 4 | Remapped | NT_187654.1 |
| NT_187655.1 | Chr8|NT_187655.1 | 6 | 6 | Remapped | NT_187655.1 |
| NW_017852931.1 | Chr8|NW_017852931.1 | 1 | 1 | Remapped | NW_017852931.1 |
| NW_018654716.1 | Chr8|NW_018654716.1 | 1 | 1 | Remapped | NW_018654716.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 26 | 26 | Remapped | NW_018654717.1 |
| NT_187578.1 | Chr9|NT_187578.1 | 1 | 1 | Remapped | NT_187578.1 |
| NW_003315930.1 | Chr9|NW_003315930.1 | 1 | 1 | Remapped | NW_003315930.1 |
| NW_009646201.1 | Chr9|NW_009646201.1 | 3 | 3 | Remapped | NW_009646201.1 |
| NT_187579.1 | Chr10|NT_187579.1 | 19 | 19 | Remapped | NT_187579.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 1 | 1 | Remapped | NW_003315934.1 |
| NW_013171807.1 | Chr10|NW_013171807.1 | 2 | 2 | Remapped | NW_013171807.1 |
| NT_187681.1 | Chr11|NT_187681.1 | 4 | 4 | Remapped | NT_187681.1 |
| NT_187656.1 | Chr11|NT_187656.1 | 2 | 2 | Remapped | NT_187656.1 |
| NT_187657.1 | Chr11|NT_187657.1 | 1 | 1 | Remapped | NT_187657.1 |
| NT_187581.1 | Chr11|NT_187581.1 | 3 | 3 | Remapped | NT_187581.1 |
| NT_187584.1 | Chr11|NT_187584.1 | 1 | 1 | Remapped | NT_187584.1 |
| NT_187585.1 | Chr11|NT_187585.1 | 3 | 3 | Remapped | NT_187585.1 |
| NT_187586.1 | Chr11|NT_187586.1 | 4 | 4 | Remapped | NT_187586.1 |
| NW_013171808.1 | Chr11|NW_013171808.1 | 1 | 1 | Remapped | NW_013171808.1 |
| NW_015148966.1 | Chr11|NW_015148966.1 | 5 | 5 | Remapped | NW_015148966.1 |
| NW_019805495.1 | Chr11|NW_019805495.1 | 2 | 2 | Remapped | NW_019805495.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 2 | 2 | Remapped | NT_187658.1 |
| NT_187589.1 | Chr12|NT_187589.1 | 2 | 2 | Remapped | NT_187589.1 |
| NT_187591.1 | Chr12|NT_187591.1 | 1 | 1 | Remapped | NT_187591.1 |
| NW_003571049.1 | Chr12|NW_003571049.1 | 5 | 5 | Remapped | NW_003571049.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 2 | 2 | Remapped | NW_003571050.1 |
| NW_011332696.1 | Chr12|NW_011332696.1 | 1 | 1 | Remapped | NW_011332696.1 |
| NW_015148967.1 | Chr12|NW_015148967.1 | 2 | 2 | Remapped | NW_015148967.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 5 | 5 | Remapped | NW_018654718.1 |
| NW_018654719.1 | Chr12|NW_018654719.1 | 2 | 2 | Remapped | NW_018654719.1 |
| NW_019805499.1 | Chr12|NW_019805499.1 | 2 | 2 | Remapped | NW_019805499.1 |
| NT_187592.1 | Chr13|NT_187592.1 | 4 | 4 | Remapped | NT_187592.1 |
| NT_187594.1 | Chr13|NT_187594.1 | 2 | 2 | Remapped | NT_187594.1 |
| NW_011332698.1 | Chr13|NW_011332698.1 | 4 | 4 | Remapped | NW_011332698.1 |
| NW_011332699.1 | Chr13|NW_011332699.1 | 16 | 16 | Remapped | NW_011332699.1 |
| NW_011332700.1 | Chr13|NW_011332700.1 | 1 | 1 | Remapped | NW_011332700.1 |
| NW_013171811.1 | Chr13|NW_013171811.1 | 1 | 1 | Remapped | NW_013171811.1 |
| NT_113796.3 | Chr14|NT_113796.3 | 1 | 1 | Remapped | NT_113796.3 |
| NT_187599.1 | Chr14|NT_187599.1 | 1 | 1 | Remapped | NT_187599.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 22 | 22 | Remapped | NT_187600.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 3 | 3 | Remapped | NT_187601.1 |
| NW_018654721.1 | Chr14|NW_018654721.1 | 1 | 1 | Remapped | NW_018654721.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 2 | 2 | Remapped | NW_018654722.1 |
| NT_187659.1 | Chr15|NT_187659.1 | 1 | 1 | Remapped | NT_187659.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 19 | 19 | Remapped | NT_187660.1 |
| NT_187382.1 | Chr15|NT_187382.1 | 1 | 1 | Remapped | NT_187382.1 |
| NT_187602.1 | Chr15|NT_187602.1 | 2 | 2 | Remapped | NT_187602.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 1 | 1 | Remapped | NT_187603.1 |
| NT_187604.1 | Chr15|NT_187604.1 | 5 | 5 | Remapped | NT_187604.1 |
| NT_187605.1 | Chr15|NT_187605.1 | 1 | 1 | Remapped | NT_187605.1 |
| NT_187606.1 | Chr15|NT_187606.1 | 4 | 4 | Remapped | NT_187606.1 |
| NW_003315943.1 | Chr15|NW_003315943.1 | 9 | 9 | Remapped | NW_003315943.1 |
| NW_003315944.2 | Chr15|NW_003315944.2 | 1 | 1 | Remapped | NW_003315944.2 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 20 | 20 | Remapped | NW_011332701.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 16 | 16 | Remapped | NT_187607.1 |
| NW_013171813.1 | Chr16|NW_013171813.1 | 1 | 1 | Remapped | NW_013171813.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 8 | 8 | Remapped | NW_017852933.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 2 | 2 | Remapped | NT_187661.1 |
| NT_187662.1 | Chr17|NT_187662.1 | 7 | 7 | Remapped | NT_187662.1 |
| NT_187664.1 | Chr17|NT_187664.1 | 3 | 3 | Remapped | NT_187664.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 1 | 1 | Remapped | NW_003871093.1 |
| NT_187611.1 | Chr17|NT_187611.1 | 2 | 2 | Remapped | NT_187611.1 |
| NT_187612.1 | Chr17|NT_187612.1 | 2 | 2 | Remapped | NT_187612.1 |
| NT_187613.1 | Chr17|NT_187613.1 | 5 | 5 | Remapped | NT_187613.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 10 | 10 | Remapped | NT_187614.1 |
| NT_187615.1 | Chr17|NT_187615.1 | 2 | 2 | Remapped | NT_187615.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 11 | 11 | Remapped | NW_003315952.3 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 3 | 3 | Remapped | NW_003315954.1 |
| NW_003315955.1 | Chr17|NW_003315955.1 | 4 | 4 | Remapped | NW_003315955.1 |
| NW_003871092.1 | Chr17|NW_003871092.1 | 1 | 1 | Remapped | NW_003871092.1 |
| NW_017363817.1 | Chr17|NW_017363817.1 | 5 | 5 | Remapped | NW_017363817.1 |
| NW_017363818.1 | Chr17|NW_017363818.1 | 1 | 1 | Remapped | NW_017363818.1 |
| NW_017363819.1 | Chr17|NW_017363819.1 | 2 | 2 | Remapped | NW_017363819.1 |
| NT_187665.1 | Chr18|NT_187665.1 | 6 | 6 | Remapped | NT_187665.1 |
| NT_187666.1 | Chr18|NT_187666.1 | 3 | 3 | Remapped | NT_187666.1 |
| NT_187617.1 | Chr18|NT_187617.1 | 5 | 5 | Remapped | NT_187617.1 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 1 | 1 | Remapped | NW_003315956.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 5 | 5 | Remapped | NW_003315958.1 |
| NW_003315959.1 | Chr18|NW_003315959.1 | 1 | 1 | Remapped | NW_003315959.1 |
| NW_003315960.1 | Chr18|NW_003315960.1 | 1 | 1 | Remapped | NW_003315960.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 3 | 3 | Remapped | NW_003315961.1 |
| NW_013171814.1 | Chr18|NW_013171814.1 | 1 | 1 | Remapped | NW_013171814.1 |
| NW_019805503.1 | Chr18|NW_019805503.1 | 1 | 1 | Remapped | NW_019805503.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 8 | 8 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 5 | 5 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 4 | 4 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 4 | 4 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 4 | 4 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 6 | 6 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 4 | 4 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 4 | 4 | Remapped | NW_003571055.2 |
| NT_187622.1 | Chr19|NT_187622.1 | 2 | 2 | Remapped | NT_187622.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 2 | 2 | Remapped | NW_003315962.1 |
| NW_003315964.2 | Chr19|NW_003315964.2 | 2 | 2 | Remapped | NW_003315964.2 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 1 | 1 | Remapped | NW_003315965.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 6 | 6 | Remapped | NW_003571054.1 |
| NW_009646206.1 | Chr19|NW_009646206.1 | 2 | 2 | Remapped | NW_009646206.1 |
| NW_014040929.1 | Chr19|NW_014040929.1 | 3 | 3 | Remapped | NW_014040929.1 |
| NT_187623.1 | Chr20|NT_187623.1 | 1 | 1 | Remapped | NT_187623.1 |
| NT_187624.1 | Chr20|NT_187624.1 | 4 | 4 | Remapped | NT_187624.1 |
| NT_187626.1 | Chr21|NT_187626.1 | 2 | 2 | Remapped | NT_187626.1 |
| NT_187628.1 | Chr21|NT_187628.1 | 1 | 1 | Remapped | NT_187628.1 |
| NW_003315967.2 | Chr21|NW_003315967.2 | 1 | 1 | Remapped | NW_003315967.2 |
| NW_003315969.2 | Chr21|NW_003315969.2 | 1 | 1 | Remapped | NW_003315969.2 |
| NW_003315970.2 | Chr21|NW_003315970.2 | 1 | 1 | Remapped | NW_003315970.2 |
| NT_187682.1 | Chr22|NT_187682.1 | 1 | 1 | Remapped | NT_187682.1 |
| NW_004504305.1 | Chr22|NW_004504305.1 | 1 | 1 | Remapped | NW_004504305.1 |
| NW_009646207.1 | Chr22|NW_009646207.1 | 1 | 1 | Remapped | NW_009646207.1 |
| NT_187632.1 | Chr22|NT_187632.1 | 2 | 2 | Remapped | NT_187632.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 2 | 2 | Remapped | NT_187633.1 |
| NW_003315971.2 | Chr22|NW_003315971.2 | 1 | 1 | Remapped | NW_003315971.2 |
| NT_187667.1 | ChrX|NT_187667.1 | 8 | 8 | Remapped | NT_187667.1 |
| NT_187634.1 | ChrX|NT_187634.1 | 8 | 8 | Remapped | NT_187634.1 |
| NT_187635.1 | ChrX|NT_187635.1 | 1 | 1 | Remapped | NT_187635.1 |
| NW_009646209.1 | ChrY|NW_009646209.1 | 14 | 14 | Remapped | NW_009646209.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 654 | 654 | Submitted | NC_000001.10 |
| NC_000002.11 | Chr2 | 733 | 733 | Submitted | NC_000002.11 |
| NC_000003.11 | Chr3 | 462 | 462 | Submitted | NC_000003.11 |
| NC_000004.11 | Chr4 | 570 | 570 | Submitted | NC_000004.11 |
| NC_000005.9 | Chr5 | 441 | 441 | Submitted | NC_000005.9 |
| NC_000006.11 | Chr6 | 429 | 429 | Submitted | NC_000006.11 |
| NC_000007.13 | Chr7 | 635 | 635 | Submitted | NC_000007.13 |
| NC_000008.10 | Chr8 | 439 | 439 | Submitted | NC_000008.10 |
| NC_000009.11 | Chr9 | 507 | 507 | Submitted | NC_000009.11 |
| NC_000010.10 | Chr10 | 478 | 478 | Submitted | NC_000010.10 |
| NC_000011.9 | Chr11 | 376 | 376 | Submitted | NC_000011.9 |
| NC_000012.11 | Chr12 | 330 | 330 | Submitted | NC_000012.11 |
| NC_000013.10 | Chr13 | 261 | 261 | Submitted | NC_000013.10 |
| NC_000014.8 | Chr14 | 266 | 266 | Submitted | NC_000014.8 |
| NC_000015.9 | Chr15 | 319 | 319 | Submitted | NC_000015.9 |
| NC_000016.9 | Chr16 | 335 | 335 | Submitted | NC_000016.9 |
| NC_000017.10 | Chr17 | 299 | 299 | Submitted | NC_000017.10 |
| NC_000018.9 | Chr18 | 252 | 252 | Submitted | NC_000018.9 |
| NC_000019.9 | Chr19 | 310 | 310 | Submitted | NC_000019.9 |
| NC_000020.10 | Chr20 | 240 | 240 | Submitted | NC_000020.10 |
| NC_000021.8 | Chr21 | 237 | 237 | Submitted | NC_000021.8 |
| NC_000022.10 | Chr22 | 212 | 212 | Submitted | NC_000022.10 |
| NC_000023.10 | ChrX | 418 | 418 | Submitted | NC_000023.10 |
| NC_000024.9 | ChrY | 159 | 159 | Submitted | NC_000024.9 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.10 | Chr1 | 654 | 396 | 47 | 15 | 4 | 410 | 654 | 396 | 47 | 15 | 4 | 410 |
| NC_000002.11 | Chr2 | 733 | 522 | 8 | 6 | 2 | 404 | 733 | 522 | 8 | 6 | 2 | 404 |
| NC_000003.11 | Chr3 | 462 | 314 | 4 | 0 | 0 | 302 | 462 | 314 | 4 | 0 | 0 | 302 |
| NC_000004.11 | Chr4 | 570 | 397 | 3 | 0 | 2 | 391 | 570 | 397 | 3 | 0 | 2 | 391 |
| NC_000005.9 | Chr5 | 441 | 309 | 2 | 0 | 0 | 288 | 441 | 309 | 2 | 0 | 0 | 288 |
| NC_000006.11 | Chr6 | 429 | 300 | 5 | 6 | 0 | 265 | 429 | 300 | 5 | 6 | 0 | 265 |
| NC_000007.13 | Chr7 | 635 | 444 | 12 | 3 | 0 | 372 | 635 | 444 | 12 | 3 | 0 | 372 |
| NC_000008.10 | Chr8 | 439 | 283 | 0 | 1 | 2 | 267 | 439 | 283 | 0 | 1 | 2 | 267 |
| NC_000009.11 | Chr9 | 507 | 386 | 27 | 10 | 0 | 192 | 507 | 386 | 27 | 10 | 0 | 192 |
| NC_000010.10 | Chr10 | 478 | 319 | 9 | 2 | 1 | 389 | 478 | 319 | 9 | 2 | 1 | 389 |
| NC_000011.9 | Chr11 | 376 | 261 | 1 | 0 | 1 | 258 | 376 | 261 | 1 | 0 | 1 | 258 |
| NC_000012.11 | Chr12 | 330 | 217 | 3 | 0 | 0 | 250 | 330 | 217 | 3 | 0 | 0 | 250 |
| NC_000013.10 | Chr13 | 261 | 192 | 0 | 0 | 0 | 163 | 261 | 192 | 0 | 0 | 0 | 163 |
| NC_000014.8 | Chr14 | 266 | 155 | 6 | 4 | 2 | 216 | 266 | 155 | 6 | 4 | 2 | 216 |
| NC_000015.9 | Chr15 | 319 | 209 | 6 | 1 | 0 | 192 | 319 | 209 | 6 | 1 | 0 | 192 |
| NC_000016.9 | Chr16 | 335 | 176 | 3 | 2 | 1 | 339 | 335 | 176 | 3 | 2 | 1 | 339 |
| NC_000017.10 | Chr17 | 299 | 179 | 4 | 3 | 0 | 221 | 299 | 179 | 4 | 3 | 0 | 221 |
| NC_000018.9 | Chr18 | 252 | 180 | 1 | 0 | 1 | 150 | 252 | 180 | 1 | 0 | 1 | 150 |
| NC_000019.9 | Chr19 | 310 | 202 | 3 | 0 | 0 | 256 | 310 | 202 | 3 | 0 | 0 | 256 |
| NC_000020.10 | Chr20 | 240 | 165 | 3 | 1 | 0 | 155 | 240 | 165 | 3 | 1 | 0 | 155 |
| NC_000021.8 | Chr21 | 237 | 151 | 4 | 0 | 0 | 179 | 237 | 151 | 4 | 0 | 0 | 179 |
| NC_000022.10 | Chr22 | 212 | 148 | 10 | 3 | 3 | 108 | 212 | 148 | 10 | 3 | 3 | 108 |
| NC_000023.10 | ChrX | 418 | 318 | 28 | 5 | 6 | 121 | 418 | 318 | 28 | 5 | 6 | 121 |
| NC_000024.9 | ChrY | 159 | 120 | 1 | 0 | 0 | 81 | 159 | 120 | 1 | 0 | 0 | 81 |
Samplesets
Number of Samplesets: 1
- Name:
- KWB1
- Size:
- 1 (sample data not available)
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
- Sex:
- Male
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Number of Variant Calls |
|---|---|---|---|---|---|
| 1 | Discovery | Sequencing | Read depth and paired-end mapping | Illumina HiSeq 2000 | 8,440 |