nstd156 (Fu et al. 2018)
- Organism:
- Human
- Study Type:
- Collection
- Submitter:
- Boon-Peng Hoh
- Description:
- The genome-wide CNVs of 4 major native populations from Peninsular Malaysia, including the Malay and 3 Orang Asli populations namely, Proto-Malay, Senoi and Negrito, were genotyped by using Affymetrix Genome-wide SNP 6.0 array. Averagely more than 100 CNVs were detected in every individual. Putting in a context of global populations, the Malaysian population specific CNVs were well characterized and found to be linking to genes relating to the local adaptation process experienced by these native populations. See Variant Summary counts for nstd156 in dbVar Variant Summary.
- Publication(s):
- Fu et al. 2018
Detailed Information: Download 963 Variant Regions, Download 11796 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Remapped: GRCh37.p13 (hg19)
Submitted: NCBI36 (hg18)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 76 | 984 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 74 | 760 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 64 | 607 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 73 | 971 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 51 | 849 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 55 | 756 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 66 | 842 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 62 | 565 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 55 | 701 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 40 | 448 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 50 | 481 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 50 | 549 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 26 | 138 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 28 | 196 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 23 | 341 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 32 | 613 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 26 | 410 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 21 | 129 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 32 | 454 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 14 | 125 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 17 | 179 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 12 | 225 | Remapped | NC_000022.11 |
| NT_187518.1 | Chr1|NT_187518.1 | 1 | 22 | Remapped | NT_187518.1 |
| NT_187646.1 | Chr1|NT_187646.1 | 1 | 22 | Remapped | NT_187646.1 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 1 | 1 | Remapped | NW_011332687.1 |
| NW_011332688.1 | Chr1|NW_011332688.1 | 1 | 1 | Remapped | NW_011332688.1 |
| NW_012132914.1 | Chr1|NW_012132914.1 | 0 | 3 | Remapped | NW_012132914.1 |
| NW_017852928.1 | Chr1|NW_017852928.1 | 1 | 42 | Remapped | NW_017852928.1 |
| NW_018654707.1 | Chr1|NW_018654707.1 | 1 | 87 | Remapped | NW_018654707.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 1 | 1 | Remapped | NT_187523.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 1 | 1 | Remapped | NT_187647.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 0 | 1 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 0 | 1 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 0 | 1 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 0 | 1 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 0 | 1 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 0 | 1 | Remapped | NT_187532.1 |
| NT_187536.1 | Chr3|NT_187536.1 | 1 | 16 | Remapped | NT_187536.1 |
| NT_187537.1 | Chr3|NT_187537.1 | 1 | 2 | Remapped | NT_187537.1 |
| NT_187539.1 | Chr3|NT_187539.1 | 2 | 4 | Remapped | NT_187539.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 0 | 1 | Remapped | NT_187649.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 2 | 4 | Remapped | NW_003315915.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 1 | 1 | Remapped | NW_016107298.1 |
| NT_167246.2 | Chr6|NT_167246.2 | 4 | 188 | Remapped | NT_167246.2 |
| NT_167247.2 | Chr6|NT_167247.2 | 2 | 40 | Remapped | NT_167247.2 |
| NT_167249.2 | Chr6|NT_167249.2 | 2 | 107 | Remapped | NT_167249.2 |
| NT_167245.2 | Chr6|NT_167245.2 | 1 | 39 | Remapped | NT_167245.2 |
| NT_187558.1 | Chr7|NT_187558.1 | 1 | 60 | Remapped | NT_187558.1 |
| NT_187560.1 | Chr7|NT_187560.1 | 1 | 91 | Remapped | NT_187560.1 |
| NT_187561.1 | Chr7|NT_187561.1 | 0 | 2 | Remapped | NT_187561.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 7 | 209 | Remapped | NT_187562.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 1 | 60 | Remapped | NT_187653.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 2 | 144 | Remapped | NW_018654714.1 |
| NW_018654715.1 | Chr7|NW_018654715.1 | 0 | 1 | Remapped | NW_018654715.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 3 | 121 | Remapped | NT_187576.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 1 | 1 | Remapped | NT_187654.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 2 | 60 | Remapped | NW_018654717.1 |
| NW_009646201.1 | Chr9|NW_009646201.1 | 1 | 1 | Remapped | NW_009646201.1 |
| NW_013171806.1 | Chr10|NW_013171806.1 | 1 | 42 | Remapped | NW_013171806.1 |
| NT_187583.1 | Chr11|NT_187583.1 | 1 | 9 | Remapped | NT_187583.1 |
| NW_011332695.1 | Chr11|NW_011332695.1 | 1 | 9 | Remapped | NW_011332695.1 |
| NW_017363816.1 | Chr11|NW_017363816.1 | 1 | 1 | Remapped | NW_017363816.1 |
| NW_019805495.1 | Chr11|NW_019805495.1 | 1 | 16 | Remapped | NW_019805495.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 1 | 44 | Remapped | NT_187658.1 |
| NW_003571049.1 | Chr12|NW_003571049.1 | 1 | 1 | Remapped | NW_003571049.1 |
| NW_011332696.1 | Chr12|NW_011332696.1 | 2 | 10 | Remapped | NW_011332696.1 |
| NW_015148967.1 | Chr12|NW_015148967.1 | 1 | 2 | Remapped | NW_015148967.1 |
| NW_019805499.1 | Chr12|NW_019805499.1 | 1 | 3 | Remapped | NW_019805499.1 |
| NW_011332699.1 | Chr13|NW_011332699.1 | 1 | 1 | Remapped | NW_011332699.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 3 | 9 | Remapped | NT_187600.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 1 | 1 | Remapped | NT_187601.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 1 | 1 | Remapped | NW_018654722.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 1 | 12 | Remapped | NT_187660.1 |
| NW_003315944.2 | Chr15|NW_003315944.2 | 1 | 1 | Remapped | NW_003315944.2 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 2 | 14 | Remapped | NW_011332701.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 1 | 8 | Remapped | NT_187607.1 |
| NW_003315945.1 | Chr16|NW_003315945.1 | 1 | 27 | Remapped | NW_003315945.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 2 | 4 | Remapped | NW_017852933.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 1 | 52 | Remapped | NT_187661.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 6 | 7 | Remapped | NT_187663.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 1 | 83 | Remapped | NW_003871093.1 |
| NT_167251.2 | Chr17|NT_167251.2 | 5 | 5 | Remapped | NT_167251.2 |
| NT_187614.1 | Chr17|NT_187614.1 | 1 | 52 | Remapped | NT_187614.1 |
| NW_003315953.2 | Chr17|NW_003315953.2 | 1 | 2 | Remapped | NW_003315953.2 |
| NW_003871092.1 | Chr17|NW_003871092.1 | 1 | 1 | Remapped | NW_003871092.1 |
| NW_017363819.1 | Chr17|NW_017363819.1 | 0 | 39 | Remapped | NW_017363819.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 4 | 33 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 2 | 24 | Remapped | NW_003571061.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 2 | 24 | Remapped | NW_003571060.1 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 1 | 1 | Remapped | NW_003571055.2 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 1 | 1 | Remapped | NW_003315965.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 3 | 25 | Remapped | NW_003571054.1 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 1 | 2 | Remapped | NW_003315968.2 |
| NT_187633.1 | Chr22|NT_187633.1 | 1 | 149 | Remapped | NT_187633.1 |
| NW_003315972.2 | Chr22|NW_003315972.2 | 2 | 16 | Remapped | NW_003315972.2 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 78 | 993 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 74 | 760 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 64 | 607 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 72 | 970 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 51 | 849 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 56 | 756 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 66 | 954 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 64 | 658 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 59 | 710 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 41 | 453 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 49 | 480 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 49 | 548 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 26 | 138 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 29 | 201 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 24 | 415 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 31 | 608 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 26 | 410 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 21 | 129 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 32 | 454 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 14 | 125 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 17 | 179 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 12 | 296 | Remapped | NC_000022.10 |
| NW_003315903.1 | Chr1|NW_003315903.1 | 1 | 1 | Remapped | NW_003315903.1 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 4 | 13 | Remapped | NW_003871055.3 |
| NW_003571032.1 | Chr2|NW_003571032.1 | 0 | 1 | Remapped | NW_003571032.1 |
| NW_003315915.1 | Chr4|NW_003315915.1 | 2 | 4 | Remapped | NW_003315915.1 |
| NW_003571034.1 | Chr4|NW_003571034.1 | 1 | 1 | Remapped | NW_003571034.1 |
| NW_004775427.1 | Chr4|NW_004775427.1 | 1 | 2 | Remapped | NW_004775427.1 |
| NT_167245.1 | Chr6|NT_167245.1 | 2 | 121 | Remapped | NT_167245.1 |
| NT_167246.1 | Chr6|NT_167246.1 | 5 | 256 | Remapped | NT_167246.1 |
| NT_167247.1 | Chr6|NT_167247.1 | 2 | 40 | Remapped | NT_167247.1 |
| NT_167249.1 | Chr6|NT_167249.1 | 2 | 107 | Remapped | NT_167249.1 |
| NW_004070866.1 | Chr6|NW_004070866.1 | 1 | 4 | Remapped | NW_004070866.1 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 7 | 209 | Remapped | NW_003571040.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 3 | 121 | Remapped | NW_003571042.1 |
| NW_003315925.1 | Chr9|NW_003315925.1 | 1 | 1 | Remapped | NW_003315925.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 2 | 8 | Remapped | NW_003871068.1 |
| NW_003571045.1 | Chr11|NW_003571045.1 | 1 | 1 | Remapped | NW_003571045.1 |
| NW_003571048.1 | Chr12|NW_003571048.1 | 1 | 1 | Remapped | NW_003571048.1 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 2 | 8 | Remapped | NW_004166863.1 |
| NW_003315944.1 | Chr15|NW_003315944.1 | 1 | 1 | Remapped | NW_003315944.1 |
| NW_003315945.1 | Chr16|NW_003315945.1 | 1 | 27 | Remapped | NW_003315945.1 |
| NT_167251.1 | Chr17|NT_167251.1 | 1 | 45 | Remapped | NT_167251.1 |
| NW_003315949.1 | Chr17|NW_003315949.1 | 1 | 52 | Remapped | NW_003315949.1 |
| NW_003871087.1 | Chr17|NW_003871087.1 | 1 | 1 | Remapped | NW_003871087.1 |
| NW_003871092.1 | Chr17|NW_003871092.1 | 1 | 1 | Remapped | NW_003871092.1 |
| NW_003871093.1 | Chr17|NW_003871093.1 | 1 | 83 | Remapped | NW_003871093.1 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 1 | 1 | Remapped | NW_003315965.1 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 2 | 21 | Remapped | NW_003571053.2 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 1 | 8 | Remapped | NW_004166865.1 |
| NW_003315968.1 | Chr21|NW_003315968.1 | 1 | 2 | Remapped | NW_003315968.1 |
| NW_003315972.1 | Chr22|NW_003315972.1 | 2 | 16 | Remapped | NW_003315972.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.9 | Chr1 | 78 | 993 | Submitted | NC_000001.9 |
| NC_000002.10 | Chr2 | 74 | 760 | Submitted | NC_000002.10 |
| NC_000003.10 | Chr3 | 64 | 607 | Submitted | NC_000003.10 |
| NC_000004.10 | Chr4 | 73 | 971 | Submitted | NC_000004.10 |
| NC_000005.8 | Chr5 | 51 | 849 | Submitted | NC_000005.8 |
| NC_000006.10 | Chr6 | 56 | 756 | Submitted | NC_000006.10 |
| NC_000007.12 | Chr7 | 70 | 1,043 | Submitted | NC_000007.12 |
| NC_000008.9 | Chr8 | 64 | 662 | Submitted | NC_000008.9 |
| NC_000009.10 | Chr9 | 59 | 710 | Submitted | NC_000009.10 |
| NC_000010.9 | Chr10 | 41 | 453 | Submitted | NC_000010.9 |
| NC_000011.8 | Chr11 | 50 | 481 | Submitted | NC_000011.8 |
| NC_000012.10 | Chr12 | 50 | 549 | Submitted | NC_000012.10 |
| NC_000013.9 | Chr13 | 26 | 138 | Submitted | NC_000013.9 |
| NC_000014.7 | Chr14 | 29 | 201 | Submitted | NC_000014.7 |
| NC_000015.8 | Chr15 | 24 | 415 | Submitted | NC_000015.8 |
| NC_000016.8 | Chr16 | 31 | 607 | Submitted | NC_000016.8 |
| NC_000017.9 | Chr17 | 26 | 410 | Submitted | NC_000017.9 |
| NC_000018.8 | Chr18 | 21 | 129 | Submitted | NC_000018.8 |
| NC_000019.8 | Chr19 | 33 | 462 | Submitted | NC_000019.8 |
| NC_000020.9 | Chr20 | 14 | 125 | Submitted | NC_000020.9 |
| NC_000021.7 | Chr21 | 17 | 179 | Submitted | NC_000021.7 |
| NC_000022.9 | Chr22 | 12 | 296 | Submitted | NC_000022.9 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 78 | 72 | 0 | 3 | 0 | 3 | 993 | 982 | 0 | 4 | 0 | 7 |
| NC_000002.10 | Chr2 | 74 | 69 | 1 | 3 | 0 | 1 | 760 | 697 | 1 | 60 | 0 | 2 |
| NC_000003.10 | Chr3 | 64 | 63 | 1 | 0 | 0 | 0 | 607 | 603 | 4 | 0 | 0 | 0 |
| NC_000004.10 | Chr4 | 73 | 68 | 0 | 2 | 0 | 3 | 971 | 961 | 0 | 4 | 0 | 6 |
| NC_000005.8 | Chr5 | 51 | 50 | 0 | 1 | 0 | 0 | 849 | 847 | 0 | 2 | 0 | 0 |
| NC_000006.10 | Chr6 | 56 | 50 | 0 | 0 | 0 | 6 | 756 | 486 | 0 | 0 | 0 | 270 |
| NC_000007.12 | Chr7 | 70 | 61 | 4 | 2 | 0 | 3 | 1,043 | 734 | 88 | 100 | 0 | 121 |
| NC_000008.9 | Chr8 | 64 | 59 | 0 | 2 | 0 | 3 | 662 | 475 | 0 | 70 | 0 | 117 |
| NC_000009.10 | Chr9 | 59 | 52 | 1 | 5 | 0 | 1 | 710 | 666 | 3 | 39 | 0 | 2 |
| NC_000010.9 | Chr10 | 41 | 38 | 0 | 1 | 0 | 2 | 453 | 348 | 86 | 11 | 0 | 8 |
| NC_000011.8 | Chr11 | 50 | 47 | 1 | 2 | 0 | 0 | 481 | 477 | 2 | 2 | 0 | 0 |
| NC_000012.10 | Chr12 | 50 | 49 | 0 | 1 | 0 | 0 | 549 | 548 | 0 | 1 | 0 | 0 |
| NC_000013.9 | Chr13 | 26 | 26 | 0 | 0 | 0 | 0 | 138 | 138 | 0 | 0 | 0 | 0 |
| NC_000014.7 | Chr14 | 29 | 26 | 1 | 0 | 0 | 2 | 201 | 184 | 9 | 0 | 0 | 8 |
| NC_000015.8 | Chr15 | 24 | 22 | 0 | 1 | 0 | 1 | 415 | 340 | 0 | 74 | 0 | 1 |
| NC_000016.8 | Chr16 | 31 | 29 | 0 | 0 | 0 | 2 | 607 | 575 | 0 | 0 | 0 | 32 |
| NC_000017.9 | Chr17 | 26 | 13 | 8 | 0 | 0 | 5 | 410 | 170 | 58 | 0 | 0 | 182 |
| NC_000018.8 | Chr18 | 21 | 20 | 1 | 0 | 0 | 0 | 129 | 128 | 1 | 0 | 0 | 0 |
| NC_000019.8 | Chr19 | 33 | 28 | 1 | 1 | 0 | 3 | 462 | 412 | 5 | 23 | 0 | 22 |
| NC_000020.9 | Chr20 | 14 | 14 | 0 | 0 | 0 | 0 | 125 | 125 | 0 | 0 | 0 | 0 |
| NC_000021.7 | Chr21 | 17 | 16 | 0 | 0 | 0 | 1 | 179 | 177 | 0 | 0 | 0 | 2 |
| NC_000022.9 | Chr22 | 12 | 10 | 0 | 0 | 0 | 2 | 296 | 280 | 0 | 0 | 0 | 16 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 78 | 66 | 1 | 4 | 1 | 6 | 993 | 781 | 39 | 12 | 4 | 157 |
| NC_000002.10 | Chr2 | 74 | 69 | 3 | 1 | 0 | 1 | 760 | 745 | 8 | 6 | 0 | 1 |
| NC_000003.10 | Chr3 | 64 | 57 | 3 | 0 | 0 | 4 | 607 | 578 | 6 | 0 | 0 | 23 |
| NC_000004.10 | Chr4 | 73 | 67 | 2 | 2 | 0 | 2 | 971 | 903 | 60 | 4 | 0 | 4 |
| NC_000005.8 | Chr5 | 51 | 48 | 1 | 1 | 0 | 1 | 849 | 832 | 14 | 2 | 0 | 1 |
| NC_000006.10 | Chr6 | 56 | 50 | 0 | 0 | 1 | 5 | 756 | 496 | 0 | 4 | 0 | 256 |
| NC_000007.12 | Chr7 | 70 | 56 | 3 | 3 | 1 | 7 | 1,043 | 522 | 6 | 187 | 11 | 317 |
| NC_000008.9 | Chr8 | 64 | 57 | 0 | 3 | 0 | 4 | 662 | 501 | 0 | 76 | 0 | 85 |
| NC_000009.10 | Chr9 | 59 | 44 | 0 | 9 | 4 | 2 | 710 | 655 | 2 | 42 | 9 | 2 |
| NC_000010.9 | Chr10 | 41 | 36 | 0 | 3 | 1 | 1 | 453 | 303 | 88 | 14 | 5 | 43 |
| NC_000011.8 | Chr11 | 50 | 41 | 6 | 0 | 0 | 3 | 481 | 448 | 7 | 0 | 0 | 26 |
| NC_000012.10 | Chr12 | 50 | 44 | 0 | 0 | 0 | 6 | 549 | 489 | 0 | 0 | 0 | 60 |
| NC_000013.9 | Chr13 | 26 | 26 | 0 | 0 | 0 | 0 | 138 | 138 | 0 | 0 | 0 | 0 |
| NC_000014.7 | Chr14 | 29 | 20 | 2 | 1 | 1 | 5 | 201 | 177 | 4 | 4 | 5 | 11 |
| NC_000015.8 | Chr15 | 24 | 19 | 0 | 1 | 1 | 3 | 415 | 325 | 0 | 1 | 74 | 15 |
| NC_000016.8 | Chr16 | 31 | 24 | 1 | 2 | 0 | 4 | 607 | 482 | 1 | 85 | 0 | 39 |
| NC_000017.9 | Chr17 | 26 | 12 | 3 | 1 | 0 | 10 | 410 | 170 | 55 | 1 | 0 | 184 |
| NC_000018.8 | Chr18 | 21 | 19 | 1 | 1 | 0 | 0 | 129 | 127 | 1 | 1 | 0 | 0 |
| NC_000019.8 | Chr19 | 33 | 25 | 4 | 0 | 0 | 4 | 462 | 413 | 23 | 0 | 0 | 26 |
| NC_000020.9 | Chr20 | 14 | 14 | 0 | 0 | 0 | 0 | 125 | 125 | 0 | 0 | 0 | 0 |
| NC_000021.7 | Chr21 | 17 | 13 | 2 | 0 | 0 | 2 | 179 | 174 | 2 | 0 | 0 | 3 |
| NC_000022.9 | Chr22 | 12 | 7 | 1 | 2 | 0 | 2 | 296 | 199 | 1 | 1 | 1 | 94 |
Samplesets
Number of Samplesets: 1
- Name:
- Peninsular Malaysian populations
- Size:
- 93
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Ethnicity | Subject Phenotype |
|---|---|---|---|---|
| NGO_10 | peripheral blood | NGO_10 | Negrito | Not reported |
| MLY_13 | peripheral blood | MLY_13 | Malay | Not reported |
| NGO_47 | peripheral blood | NGO_47 | Negrito | Not reported |
| NGO_28 | peripheral blood | NGO_28 | Negrito | Not reported |
| MLY_6 | peripheral blood | MLY_6 | Malay | Not reported |
| SNI_2 | peripheral blood | SNI_2 | Senoi | Not reported |
| NGO_43 | peripheral blood | NGO_43 | Negrito | Not reported |
| PML_1 | peripheral blood | PML_1 | Proto-Malay | Not reported |
| NGO_20 | peripheral blood | NGO_20 | Negrito | Not reported |
| NGO_44 | peripheral blood | NGO_44 | Negrito | Not reported |
| NGO_37 | peripheral blood | NGO_37 | Negrito | Not reported |
| SNI_8 | peripheral blood | SNI_8 | Senoi | Not reported |
| SNI_6 | peripheral blood | SNI_6 | Senoi | Not reported |
| SNI_4 | peripheral blood | SNI_4 | Senoi | Not reported |
| NGO_46 | peripheral blood | NGO_46 | Negrito | Not reported |
| NGO_54 | peripheral blood | NGO_54 | Negrito | Not reported |
| NGO_30 | peripheral blood | NGO_30 | Negrito | Not reported |
| NGO_39 | peripheral blood | NGO_39 | Negrito | Not reported |
| SNI_3 | peripheral blood | SNI_3 | Senoi | Not reported |
| NGO_49 | peripheral blood | NGO_49 | Negrito | Not reported |
| NGO_42 | peripheral blood | NGO_42 | Negrito | Not reported |
| NGO_15 | peripheral blood | NGO_15 | Negrito | Not reported |
| SNI_11 | peripheral blood | SNI_11 | Senoi | Not reported |
| SNI_5 | peripheral blood | SNI_5 | Senoi | Not reported |
| SNI_12 | peripheral blood | SNI_12 | Senoi | Not reported |
| NGO_22 | peripheral blood | NGO_22 | Negrito | Not reported |
| SNI_13 | peripheral blood | SNI_13 | Senoi | Not reported |
| MLY_7 | peripheral blood | MLY_7 | Malay | Not reported |
| SNI_15 | peripheral blood | SNI_15 | Senoi | Not reported |
| SNI_10 | peripheral blood | SNI_10 | Senoi | Not reported |
| NGO_48 | peripheral blood | NGO_48 | Negrito | Not reported |
| NGO_16 | peripheral blood | NGO_16 | Negrito | Not reported |
| NGO_3 | peripheral blood | NGO_3 | Negrito | Not reported |
| SNI_14 | peripheral blood | SNI_14 | Senoi | Not reported |
| NGO_12 | peripheral blood | NGO_12 | Negrito | Not reported |
| PML_2 | peripheral blood | PML_2 | Proto-Malay | Not reported |
| NGO_53 | peripheral blood | NGO_53 | Negrito | Not reported |
| MLY_4 | peripheral blood | MLY_4 | Malay | Not reported |
| NGO_2 | peripheral blood | NGO_2 | Negrito | Not reported |
| NGO_24 | peripheral blood | NGO_24 | Negrito | Not reported |
| MLY_1 | peripheral blood | MLY_1 | Malay | Not reported |
| NGO_8 | peripheral blood | NGO_8 | Negrito | Not reported |
| NGO_40 | peripheral blood | NGO_40 | Negrito | Not reported |
| NGO_51 | peripheral blood | NGO_51 | Negrito | Not reported |
| NGO_25 | peripheral blood | NGO_25 | Negrito | Not reported |
| NGO_27 | peripheral blood | NGO_27 | Negrito | Not reported |
| NGO_35 | peripheral blood | NGO_35 | Negrito | Not reported |
| NGO_6 | peripheral blood | NGO_6 | Negrito | Not reported |
| NGO_19 | peripheral blood | NGO_19 | Negrito | Not reported |
| NGO_4 | peripheral blood | NGO_4 | Negrito | Not reported |
| NGO_38 | peripheral blood | NGO_38 | Negrito | Not reported |
| NGO_5 | peripheral blood | NGO_5 | Negrito | Not reported |
| SNI_16 | peripheral blood | SNI_16 | Senoi | Not reported |
| SNI_9 | peripheral blood | SNI_9 | Senoi | Not reported |
| MLY_5 | peripheral blood | MLY_5 | Malay | Not reported |
| NGO_52 | peripheral blood | NGO_52 | Negrito | Not reported |
| NGO_13 | peripheral blood | NGO_13 | Negrito | Not reported |
| MLY_3 | peripheral blood | MLY_3 | Malay | Not reported |
| MLY_15 | peripheral blood | MLY_15 | Malay | Not reported |
| NGO_1 | peripheral blood | NGO_1 | Negrito | Not reported |
| MLY_11 | peripheral blood | MLY_11 | Malay | Not reported |
| SNI_17 | peripheral blood | SNI_17 | Senoi | Not reported |
| MLY_14 | peripheral blood | MLY_14 | Malay | Not reported |
| NGO_23 | peripheral blood | NGO_23 | Negrito | Not reported |
| NGO_17 | peripheral blood | NGO_17 | Negrito | Not reported |
| NGO_29 | peripheral blood | NGO_29 | Negrito | Not reported |
| NGO_14 | peripheral blood | NGO_14 | Negrito | Not reported |
| NGO_34 | peripheral blood | NGO_34 | Negrito | Not reported |
| SNI_7 | peripheral blood | SNI_7 | Senoi | Not reported |
| MLY_16 | peripheral blood | MLY_16 | Malay | Not reported |
| NGO_7 | peripheral blood | NGO_7 | Negrito | Not reported |
| MLY_10 | peripheral blood | MLY_10 | Malay | Not reported |
| NGO_45 | peripheral blood | NGO_45 | Negrito | Not reported |
| NGO_36 | peripheral blood | NGO_36 | Negrito | Not reported |
| MLY_8 | peripheral blood | MLY_8 | Malay | Not reported |
| NGO_33 | peripheral blood | NGO_33 | Negrito | Not reported |
| NGO_9 | peripheral blood | NGO_9 | Negrito | Not reported |
| NGO_21 | peripheral blood | NGO_21 | Negrito | Not reported |
| MLY_12 | peripheral blood | MLY_12 | Malay | Not reported |
| NGO_31 | peripheral blood | NGO_31 | Negrito | Not reported |
| NGO_50 | peripheral blood | NGO_50 | Negrito | Not reported |
| SNI_1 | peripheral blood | SNI_1 | Senoi | Not reported |
| NGO_18 | peripheral blood | NGO_18 | Negrito | Not reported |
| NGO_55 | peripheral blood | NGO_55 | Negrito | Not reported |
| NGO_11 | peripheral blood | NGO_11 | Negrito | Not reported |
| MLY_17 | peripheral blood | MLY_17 | Malay | Not reported |
| PML_4 | peripheral blood | PML_4 | Proto-Malay | Not reported |
| PML_3 | peripheral blood | PML_3 | Proto-Malay | Not reported |
| NGO_32 | peripheral blood | NGO_32 | Negrito | Not reported |
| MLY_9 | peripheral blood | MLY_9 | Malay | Not reported |
| MLY_2 | peripheral blood | MLY_2 | Malay | Not reported |
| NGO_26 | peripheral blood | NGO_26 | Negrito | Not reported |
| NGO_41 | peripheral blood | NGO_41 | Negrito | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Number of Variant Calls |
|---|---|---|---|---|---|
| 1 | Discovery | SNP array | SNP genotyping analysis | Affymetrix Genome-wide SNP array 6.0 | 11,796 |