nstd2 (Kidd et al. 2008)

Organism:
Human
Study Type:
Control Set
Submitter:
Evan Eichler
Submitter URL:
http://hgsv.washington.edu
Description:
We implemented an approach to construct clone-based maps of eight human genomes with the aim of systematically cloning and sequencing structural variants more than 8 kbp in length. See Variant Summary counts for nstd2 in dbVar Variant Summary.
Project:
PRJNA29893
Publication(s):
Kidd et al. 2008

Detailed Information: Download 7458 Variant Regions, Download 10950 Variant Calls, Download Both, FTP

Variant Summary

Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Remapped: GRCh37.p13 (hg19)
Submitted: NCBI35 (hg17)

Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000001.11Chr1576900RemappedNC_000001.11
NC_000002.12Chr2642862RemappedNC_000002.12
NC_000003.12Chr3477644RemappedNC_000003.12
NC_000004.12Chr4437622RemappedNC_000004.12
NC_000005.10Chr5451621RemappedNC_000005.10
NC_000006.12Chr6412581RemappedNC_000006.12
NC_000007.14Chr7394625RemappedNC_000007.14
NC_000008.11Chr8379621RemappedNC_000008.11
NC_000009.12Chr9308406RemappedNC_000009.12
NC_000010.11Chr10335428RemappedNC_000010.11
NC_000011.10Chr11365535RemappedNC_000011.10
NC_000012.12Chr12356494RemappedNC_000012.12
NC_000013.11Chr13232294RemappedNC_000013.11
NC_000014.9Chr14238333RemappedNC_000014.9
NC_000015.10Chr15230327RemappedNC_000015.10
NC_000016.10Chr16226363RemappedNC_000016.10
NC_000017.11Chr17220356RemappedNC_000017.11
NC_000018.10Chr18193251RemappedNC_000018.10
NC_000019.10Chr19162292RemappedNC_000019.10
NC_000020.11Chr20188257RemappedNC_000020.11
NC_000021.9Chr2192117RemappedNC_000021.9
NC_000022.11Chr22108186RemappedNC_000022.11
NC_000023.11ChrX377611RemappedNC_000023.11
NC_000024.10ChrY57RemappedNC_000024.10
NT_187514.1Chr1|NT_187514.123RemappedNT_187514.1
NT_187515.1Chr1|NT_187515.1218RemappedNT_187515.1
NT_187516.1Chr1|NT_187516.144RemappedNT_187516.1
NT_187518.1Chr1|NT_187518.1310RemappedNT_187518.1
NT_187519.1Chr1|NT_187519.123RemappedNT_187519.1
NT_187646.1Chr1|NT_187646.1310RemappedNT_187646.1
NW_003315906.1Chr1|NW_003315906.133RemappedNW_003315906.1
NW_003315907.2Chr1|NW_003315907.226RemappedNW_003315907.2
NW_009646195.1Chr1|NW_009646195.119RemappedNW_009646195.1
NW_011332687.1Chr1|NW_011332687.123RemappedNW_011332687.1
NW_011332688.1Chr1|NW_011332688.111RemappedNW_011332688.1
NW_014040925.1Chr1|NW_014040925.113RemappedNW_014040925.1
NW_014040926.1Chr1|NW_014040926.116RemappedNW_014040926.1
NW_014040927.1Chr1|NW_014040927.111RemappedNW_014040927.1
NW_017852928.1Chr1|NW_017852928.135RemappedNW_017852928.1
NW_018654706.1Chr1|NW_018654706.114RemappedNW_018654706.1
NW_018654707.1Chr1|NW_018654707.118RemappedNW_018654707.1
NW_018654708.1Chr1|NW_018654708.111RemappedNW_018654708.1
NT_187522.1Chr2|NT_187522.111RemappedNT_187522.1
NT_187523.1Chr2|NT_187523.124RemappedNT_187523.1
NT_187524.1Chr2|NT_187524.113RemappedNT_187524.1
NT_187525.1Chr2|NT_187525.135RemappedNT_187525.1
NT_187526.1Chr2|NT_187526.113RemappedNT_187526.1
NT_187528.1Chr2|NT_187528.111RemappedNT_187528.1
NT_187529.1Chr2|NT_187529.133RemappedNT_187529.1
NT_187531.1Chr2|NT_187531.116RemappedNT_187531.1
NT_187647.1Chr2|NT_187647.124RemappedNT_187647.1
NT_187648.1Chr2|NT_187648.136RemappedNT_187648.1
NW_003315908.1Chr2|NW_003315908.113RemappedNW_003315908.1
NW_003315909.1Chr2|NW_003315909.115RemappedNW_003315909.1
NW_003571033.2Chr2|NW_003571033.211RemappedNW_003571033.2
NW_011332690.1Chr2|NW_011332690.111RemappedNW_011332690.1
NW_012132915.1Chr2|NW_012132915.1111RemappedNW_012132915.1
NW_015495299.1Chr2|NW_015495299.122RemappedNW_015495299.1
NW_018654709.1Chr2|NW_018654709.112RemappedNW_018654709.1
NW_018654710.1Chr2|NW_018654710.124RemappedNW_018654710.1
NT_187678.1Chr3|NT_187678.112RemappedNT_187678.1
NT_187688.1Chr3|NT_187688.111RemappedNT_187688.1
NT_187689.1Chr3|NT_187689.111RemappedNT_187689.1
NT_187690.1Chr3|NT_187690.111RemappedNT_187690.1
NT_187691.1Chr3|NT_187691.111RemappedNT_187691.1
NT_187532.1Chr3|NT_187532.114RemappedNT_187532.1
NT_187533.1Chr3|NT_187533.111RemappedNT_187533.1
NT_187534.1Chr3|NT_187534.114RemappedNT_187534.1
NT_187535.1Chr3|NT_187535.114RemappedNT_187535.1
NT_187536.1Chr3|NT_187536.111RemappedNT_187536.1
NT_187537.1Chr3|NT_187537.114RemappedNT_187537.1
NT_187538.1Chr3|NT_187538.114RemappedNT_187538.1
NT_187539.1Chr3|NT_187539.123RemappedNT_187539.1
NT_187649.1Chr3|NT_187649.111RemappedNT_187649.1
NW_003315913.1Chr3|NW_003315913.129RemappedNW_003315913.1
NW_003871060.2Chr3|NW_003871060.222RemappedNW_003871060.2
NW_009646197.1Chr3|NW_009646197.133RemappedNW_009646197.1
NW_018654711.1Chr3|NW_018654711.112RemappedNW_018654711.1
NW_019805488.1Chr3|NW_019805488.123RemappedNW_019805488.1
NW_019805489.1Chr3|NW_019805489.111RemappedNW_019805489.1
NW_019805490.1Chr3|NW_019805490.123RemappedNW_019805490.1
NW_019805492.1Chr3|NW_019805492.114RemappedNW_019805492.1
NT_187679.1Chr4|NT_187679.137RemappedNT_187679.1
NT_167250.2Chr4|NT_167250.211RemappedNT_167250.2
NT_187540.1Chr4|NT_187540.111RemappedNT_187540.1
NT_187541.1Chr4|NT_187541.114RemappedNT_187541.1
NT_187542.1Chr4|NT_187542.127RemappedNT_187542.1
NT_187543.1Chr4|NT_187543.123RemappedNT_187543.1
NT_187544.1Chr4|NT_187544.115RemappedNT_187544.1
NT_187545.1Chr4|NT_187545.123RemappedNT_187545.1
NT_187650.1Chr4|NT_187650.123RemappedNT_187650.1
NW_003315914.1Chr4|NW_003315914.115RemappedNW_003315914.1
NW_003315915.1Chr4|NW_003315915.124RemappedNW_003315915.1
NW_013171799.1Chr4|NW_013171799.112RemappedNW_013171799.1
NW_013171800.1Chr4|NW_013171800.111RemappedNW_013171800.1
NW_013171801.1Chr4|NW_013171801.112RemappedNW_013171801.1
NW_017363814.1Chr4|NW_017363814.115RemappedNW_017363814.1
NT_187546.1Chr5|NT_187546.123RemappedNT_187546.1
NT_187547.1Chr5|NT_187547.123RemappedNT_187547.1
NT_187549.1Chr5|NT_187549.112RemappedNT_187549.1
NT_187551.1Chr5|NT_187551.122RemappedNT_187551.1
NT_187651.1Chr5|NT_187651.124RemappedNT_187651.1
NT_187652.1Chr5|NT_187652.123RemappedNT_187652.1
NW_003315917.2Chr5|NW_003315917.211RemappedNW_003315917.2
NW_003315918.1Chr5|NW_003315918.115RemappedNW_003315918.1
NW_003315919.1Chr5|NW_003315919.113RemappedNW_003315919.1
NW_003315920.1Chr5|NW_003315920.111RemappedNW_003315920.1
NW_003571036.1Chr5|NW_003571036.115RemappedNW_003571036.1
NW_009646199.1Chr5|NW_009646199.113RemappedNW_009646199.1
NW_016107297.1Chr5|NW_016107297.123RemappedNW_016107297.1
NW_016107298.1Chr5|NW_016107298.1622RemappedNW_016107298.1
NW_018654712.1Chr5|NW_018654712.112RemappedNW_018654712.1
NT_167246.2Chr6|NT_167246.277RemappedNT_167246.2
NT_167247.2Chr6|NT_167247.21019RemappedNT_167247.2
NT_167248.2Chr6|NT_167248.21017RemappedNT_167248.2
NT_167249.2Chr6|NT_167249.2918RemappedNT_167249.2
NT_167245.2Chr6|NT_167245.2918RemappedNT_167245.2
NT_113891.3Chr6|NT_113891.31115RemappedNT_113891.3
NT_167244.2Chr6|NT_167244.255RemappedNT_167244.2
NT_187553.1Chr6|NT_187553.125RemappedNT_187553.1
NT_187554.1Chr6|NT_187554.112RemappedNT_187554.1
NT_187555.1Chr6|NT_187555.111RemappedNT_187555.1
NT_187556.1Chr6|NT_187556.122RemappedNT_187556.1
NW_003315921.1Chr6|NW_003315921.111RemappedNW_003315921.1
NW_009646200.1Chr6|NW_009646200.122RemappedNW_009646200.1
NW_012132918.1Chr6|NW_012132918.122RemappedNW_012132918.1
NW_013171802.1Chr6|NW_013171802.117RemappedNW_013171802.1
NW_013171803.1Chr6|NW_013171803.112RemappedNW_013171803.1
NW_017363815.1Chr6|NW_017363815.111RemappedNW_017363815.1
NW_018654713.1Chr6|NW_018654713.111RemappedNW_018654713.1
NT_187558.1Chr7|NT_187558.111RemappedNT_187558.1
NT_187559.1Chr7|NT_187559.122RemappedNT_187559.1
NT_187560.1Chr7|NT_187560.111RemappedNT_187560.1
NT_187561.1Chr7|NT_187561.126RemappedNT_187561.1
NT_187562.1Chr7|NT_187562.1723RemappedNT_187562.1
NT_187563.1Chr7|NT_187563.111RemappedNT_187563.1
NT_187564.1Chr7|NT_187564.122RemappedNT_187564.1
NT_187653.1Chr7|NT_187653.111RemappedNT_187653.1
NW_003315922.2Chr7|NW_003315922.211RemappedNW_003315922.2
NW_017852930.1Chr7|NW_017852930.112RemappedNW_017852930.1
NW_018654714.1Chr7|NW_018654714.1312RemappedNW_018654714.1
NW_018654715.1Chr7|NW_018654715.108RemappedNW_018654715.1
NW_019805493.1Chr7|NW_019805493.114RemappedNW_019805493.1
NT_187565.1Chr8|NT_187565.125RemappedNT_187565.1
NT_187566.1Chr8|NT_187566.119RemappedNT_187566.1
NT_187567.1Chr8|NT_187567.123RemappedNT_187567.1
NT_187568.1Chr8|NT_187568.146RemappedNT_187568.1
NT_187569.1Chr8|NT_187569.111RemappedNT_187569.1
NT_187570.1Chr8|NT_187570.111RemappedNT_187570.1
NT_187571.1Chr8|NT_187571.144RemappedNT_187571.1
NT_187572.1Chr8|NT_187572.111RemappedNT_187572.1
NT_187573.1Chr8|NT_187573.113RemappedNT_187573.1
NT_187574.1Chr8|NT_187574.126RemappedNT_187574.1
NT_187575.1Chr8|NT_187575.113RemappedNT_187575.1
NT_187576.1Chr8|NT_187576.1526RemappedNT_187576.1
NT_187577.1Chr8|NT_187577.122RemappedNT_187577.1
NT_187654.1Chr8|NT_187654.1210RemappedNT_187654.1
NW_017852931.1Chr8|NW_017852931.116RemappedNW_017852931.1
NW_017852932.1Chr8|NW_017852932.122RemappedNW_017852932.1
NW_018654717.1Chr8|NW_018654717.12160RemappedNW_018654717.1
NW_019805494.1Chr8|NW_019805494.115RemappedNW_019805494.1
NT_187578.1Chr9|NT_187578.111RemappedNT_187578.1
NW_003315930.1Chr9|NW_003315930.111RemappedNW_003315930.1
NW_003315931.1Chr9|NW_003315931.113RemappedNW_003315931.1
NW_009646201.1Chr9|NW_009646201.128RemappedNW_009646201.1
NW_013171804.1Chr9|NW_013171804.112RemappedNW_013171804.1
NW_013171805.1Chr9|NW_013171805.112RemappedNW_013171805.1
NT_187579.1Chr10|NT_187579.112RemappedNT_187579.1
NT_187580.1Chr10|NT_187580.112RemappedNT_187580.1
NW_003315934.1Chr10|NW_003315934.111RemappedNW_003315934.1
NW_009646202.1Chr10|NW_009646202.122RemappedNW_009646202.1
NW_013171806.1Chr10|NW_013171806.112RemappedNW_013171806.1
NT_187681.1Chr11|NT_187681.1416RemappedNT_187681.1
NT_187656.1Chr11|NT_187656.139RemappedNT_187656.1
NT_187657.1Chr11|NT_187657.126RemappedNT_187657.1
NT_187581.1Chr11|NT_187581.122RemappedNT_187581.1
NT_187582.1Chr11|NT_187582.111RemappedNT_187582.1
NT_187583.1Chr11|NT_187583.137RemappedNT_187583.1
NT_187584.1Chr11|NT_187584.126RemappedNT_187584.1
NT_187585.1Chr11|NT_187585.111RemappedNT_187585.1
NT_187586.1Chr11|NT_187586.112RemappedNT_187586.1
NW_003315936.1Chr11|NW_003315936.116RemappedNW_003315936.1
NW_003871073.1Chr11|NW_003871073.113RemappedNW_003871073.1
NW_003871074.1Chr11|NW_003871074.111RemappedNW_003871074.1
NW_011332695.1Chr11|NW_011332695.137RemappedNW_011332695.1
NW_013171808.1Chr11|NW_013171808.113RemappedNW_013171808.1
NW_015148966.1Chr11|NW_015148966.1211RemappedNW_015148966.1
NW_019805495.1Chr11|NW_019805495.117RemappedNW_019805495.1
NW_019805496.1Chr11|NW_019805496.113RemappedNW_019805496.1
NW_019805498.1Chr11|NW_019805498.133RemappedNW_019805498.1
NT_187658.1Chr12|NT_187658.112RemappedNT_187658.1
NT_187587.1Chr12|NT_187587.122RemappedNT_187587.1
NT_187589.1Chr12|NT_187589.111RemappedNT_187589.1
NT_187590.1Chr12|NT_187590.111RemappedNT_187590.1
NW_003315938.1Chr12|NW_003315938.112RemappedNW_003315938.1
NW_003315939.2Chr12|NW_003315939.217RemappedNW_003315939.2
NW_003315940.1Chr12|NW_003315940.125RemappedNW_003315940.1
NW_003315941.1Chr12|NW_003315941.113RemappedNW_003315941.1
NW_003315942.2Chr12|NW_003315942.212RemappedNW_003315942.2
NW_003571049.1Chr12|NW_003571049.122RemappedNW_003571049.1
NW_009646204.1Chr12|NW_009646204.1015RemappedNW_009646204.1
NW_013171809.1Chr12|NW_013171809.111RemappedNW_013171809.1
NW_015148967.1Chr12|NW_015148967.147RemappedNW_015148967.1
NW_018654718.1Chr12|NW_018654718.149RemappedNW_018654718.1
NW_018654720.1Chr12|NW_018654720.125RemappedNW_018654720.1
NW_019805499.1Chr12|NW_019805499.116RemappedNW_019805499.1
NT_187592.1Chr13|NT_187592.136RemappedNT_187592.1
NT_187593.1Chr13|NT_187593.103RemappedNT_187593.1
NT_187594.1Chr13|NT_187594.125RemappedNT_187594.1
NT_187595.1Chr13|NT_187595.113RemappedNT_187595.1
NW_011332698.1Chr13|NW_011332698.111RemappedNW_011332698.1
NW_013171810.1Chr13|NW_013171810.117RemappedNW_013171810.1
NW_013171811.1Chr13|NW_013171811.124RemappedNW_013171811.1
NT_187598.1Chr14|NT_187598.111RemappedNT_187598.1
NT_187599.1Chr14|NT_187599.125RemappedNT_187599.1
NT_187600.1Chr14|NT_187600.1727RemappedNT_187600.1
NT_187601.1Chr14|NT_187601.177RemappedNT_187601.1
NW_018654721.1Chr14|NW_018654721.114RemappedNW_018654721.1
NW_018654722.1Chr14|NW_018654722.1425RemappedNW_018654722.1
NT_187659.1Chr15|NT_187659.113RemappedNT_187659.1
NT_187660.1Chr15|NT_187660.1713RemappedNT_187660.1
NT_187603.1Chr15|NT_187603.113RemappedNT_187603.1
NT_187604.1Chr15|NT_187604.101RemappedNT_187604.1
NT_187605.1Chr15|NT_187605.124RemappedNT_187605.1
NT_187606.1Chr15|NT_187606.111RemappedNT_187606.1
NW_003315943.1Chr15|NW_003315943.111RemappedNW_003315943.1
NW_003315944.2Chr15|NW_003315944.249RemappedNW_003315944.2
NW_011332701.1Chr15|NW_011332701.1713RemappedNW_011332701.1
NT_187607.1Chr16|NT_187607.1610RemappedNT_187607.1
NT_187610.1Chr16|NT_187610.123RemappedNT_187610.1
NW_003315945.1Chr16|NW_003315945.102RemappedNW_003315945.1
NW_003315946.1Chr16|NW_003315946.114RemappedNW_003315946.1
NW_012132921.1Chr16|NW_012132921.114RemappedNW_012132921.1
NW_013171812.1Chr16|NW_013171812.117RemappedNW_013171812.1
NW_013171813.1Chr16|NW_013171813.124RemappedNW_013171813.1
NW_017852933.1Chr16|NW_017852933.112RemappedNW_017852933.1
NW_018654723.1Chr16|NW_018654723.1112RemappedNW_018654723.1
NW_019805500.1Chr16|NW_019805500.122RemappedNW_019805500.1
NT_187661.1Chr17|NT_187661.113RemappedNT_187661.1
NT_187662.1Chr17|NT_187662.127RemappedNT_187662.1
NT_187663.1Chr17|NT_187663.1611RemappedNT_187663.1
NT_187664.1Chr17|NT_187664.125RemappedNT_187664.1
NW_003871093.1Chr17|NW_003871093.118RemappedNW_003871093.1
NT_167251.2Chr17|NT_167251.234RemappedNT_167251.2
NT_187611.1Chr17|NT_187611.124RemappedNT_187611.1
NT_187613.1Chr17|NT_187613.136RemappedNT_187613.1
NT_187614.1Chr17|NT_187614.1610RemappedNT_187614.1
NT_187615.1Chr17|NT_187615.111RemappedNT_187615.1
NT_187616.1Chr17|NT_187616.119RemappedNT_187616.1
NW_003315952.3Chr17|NW_003315952.3513RemappedNW_003315952.3
NW_003315953.2Chr17|NW_003315953.222RemappedNW_003315953.2
NW_003315954.1Chr17|NW_003315954.127RemappedNW_003315954.1
NW_003315955.1Chr17|NW_003315955.122RemappedNW_003315955.1
NW_003871092.1Chr17|NW_003871092.123RemappedNW_003871092.1
NW_017363817.1Chr17|NW_017363817.111RemappedNW_017363817.1
NW_017363818.1Chr17|NW_017363818.111RemappedNW_017363818.1
NW_017363819.1Chr17|NW_017363819.115RemappedNW_017363819.1
NW_019805501.1Chr17|NW_019805501.119RemappedNW_019805501.1
NT_187665.1Chr18|NT_187665.134RemappedNT_187665.1
NT_187666.1Chr18|NT_187666.135RemappedNT_187666.1
NT_187617.1Chr18|NT_187617.112RemappedNT_187617.1
NT_187618.1Chr18|NT_187618.114RemappedNT_187618.1
NW_003315956.1Chr18|NW_003315956.135RemappedNW_003315956.1
NW_003315957.1Chr18|NW_003315957.114RemappedNW_003315957.1
NW_003315958.1Chr18|NW_003315958.123RemappedNW_003315958.1
NW_003315959.1Chr18|NW_003315959.112RemappedNW_003315959.1
NW_003315960.1Chr18|NW_003315960.111RemappedNW_003315960.1
NW_003315961.1Chr18|NW_003315961.135RemappedNW_003315961.1
NW_013171814.1Chr18|NW_013171814.124RemappedNW_013171814.1
NW_014040928.1Chr18|NW_014040928.116RemappedNW_014040928.1
NW_018654724.1Chr18|NW_018654724.111RemappedNW_018654724.1
NW_019805502.1Chr18|NW_019805502.111RemappedNW_019805502.1
NT_187693.1Chr19|NT_187693.1916RemappedNT_187693.1
NW_003571061.2Chr19|NW_003571061.2611RemappedNW_003571061.2
NW_003571057.2Chr19|NW_003571057.234RemappedNW_003571057.2
NW_003571058.2Chr19|NW_003571058.234RemappedNW_003571058.2
NW_003571059.2Chr19|NW_003571059.234RemappedNW_003571059.2
NW_003571060.1Chr19|NW_003571060.1813RemappedNW_003571060.1
NW_003571056.2Chr19|NW_003571056.234RemappedNW_003571056.2
NW_003571055.2Chr19|NW_003571055.259RemappedNW_003571055.2
NT_187620.1Chr19|NT_187620.122RemappedNT_187620.1
NT_187621.1Chr19|NT_187621.112RemappedNT_187621.1
NT_187622.1Chr19|NT_187622.114RemappedNT_187622.1
NW_003315962.1Chr19|NW_003315962.122RemappedNW_003315962.1
NW_003315963.1Chr19|NW_003315963.128RemappedNW_003315963.1
NW_003315965.1Chr19|NW_003315965.124RemappedNW_003315965.1
NW_003571054.1Chr19|NW_003571054.1915RemappedNW_003571054.1
NW_009646206.1Chr19|NW_009646206.1414RemappedNW_009646206.1
NW_014040929.1Chr19|NW_014040929.1113RemappedNW_014040929.1
NT_187623.1Chr20|NT_187623.112RemappedNT_187623.1
NT_187624.1Chr20|NT_187624.111RemappedNT_187624.1
NT_187625.1Chr20|NT_187625.112RemappedNT_187625.1
NW_003315966.2Chr20|NW_003315966.213RemappedNW_003315966.2
NT_187626.1Chr21|NT_187626.122RemappedNT_187626.1
NT_187627.1Chr21|NT_187627.123RemappedNT_187627.1
NT_187628.1Chr21|NT_187628.111RemappedNT_187628.1
NW_003315967.2Chr21|NW_003315967.217RemappedNW_003315967.2
NW_003315968.2Chr21|NW_003315968.224RemappedNW_003315968.2
NW_003315970.2Chr21|NW_003315970.218RemappedNW_003315970.2
NT_187682.1Chr22|NT_187682.128RemappedNT_187682.1
NT_187629.1Chr22|NT_187629.1310RemappedNT_187629.1
NT_187630.1Chr22|NT_187630.127RemappedNT_187630.1
NT_187631.1Chr22|NT_187631.123RemappedNT_187631.1
NT_187632.1Chr22|NT_187632.103RemappedNT_187632.1
NT_187633.1Chr22|NT_187633.1216RemappedNT_187633.1
NW_003315972.2Chr22|NW_003315972.211RemappedNW_003315972.2
NW_017363820.1ChrX|NW_017363820.116RemappedNW_017363820.1
NT_187635.1ChrX|NT_187635.122RemappedNT_187635.1
Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000001.10Chr1579918RemappedNC_000001.10
NC_000002.11Chr2642861RemappedNC_000002.11
NC_000003.11Chr3477644RemappedNC_000003.11
NC_000004.11Chr4437622RemappedNC_000004.11
NC_000005.9Chr5452622RemappedNC_000005.9
NC_000006.11Chr6412582RemappedNC_000006.11
NC_000007.13Chr7393628RemappedNC_000007.13
NC_000008.10Chr8382637RemappedNC_000008.10
NC_000009.11Chr9306409RemappedNC_000009.11
NC_000010.10Chr10335432RemappedNC_000010.10
NC_000011.9Chr11365535RemappedNC_000011.9
NC_000012.11Chr12354492RemappedNC_000012.11
NC_000013.10Chr13232295RemappedNC_000013.10
NC_000014.8Chr14239337RemappedNC_000014.8
NC_000015.9Chr15230327RemappedNC_000015.9
NC_000016.9Chr16226359RemappedNC_000016.9
NC_000017.10Chr17211338RemappedNC_000017.10
NC_000018.9Chr18193251RemappedNC_000018.9
NC_000019.9Chr19160290RemappedNC_000019.9
NC_000020.10Chr20188259RemappedNC_000020.10
NC_000021.8Chr2192115RemappedNC_000021.8
NC_000022.10Chr22110199RemappedNC_000022.10
NC_000023.10ChrX372590RemappedNC_000023.10
NC_000024.9ChrY57RemappedNC_000024.9
NW_003315906.1Chr1|NW_003315906.133RemappedNW_003315906.1
NW_003315907.1Chr1|NW_003315907.126RemappedNW_003315907.1
NW_003571030.1Chr1|NW_003571030.1311RemappedNW_003571030.1
NW_003871055.3Chr1|NW_003871055.31031RemappedNW_003871055.3
NW_003871056.3Chr1|NW_003871056.339RemappedNW_003871056.3
NW_003871057.1Chr1|NW_003871057.124RemappedNW_003871057.1
NW_003315908.1Chr2|NW_003315908.113RemappedNW_003315908.1
NW_003315909.1Chr2|NW_003315909.115RemappedNW_003315909.1
NW_003571033.2Chr2|NW_003571033.211RemappedNW_003571033.2
NW_004504299.1Chr2|NW_004504299.111RemappedNW_004504299.1
NW_003315910.1Chr3|NW_003315910.112RemappedNW_003315910.1
NW_003315913.1Chr3|NW_003315913.129RemappedNW_003315913.1
NW_003871058.1Chr3|NW_003871058.122RemappedNW_003871058.1
NW_003871059.1Chr3|NW_003871059.111RemappedNW_003871059.1
NW_003871060.1Chr3|NW_003871060.122RemappedNW_003871060.1
NW_004775426.1Chr3|NW_004775426.122RemappedNW_004775426.1
NT_167250.1Chr4|NT_167250.111RemappedNT_167250.1
NW_003315914.1Chr4|NW_003315914.115RemappedNW_003315914.1
NW_003315915.1Chr4|NW_003315915.124RemappedNW_003315915.1
NW_003571035.1Chr4|NW_003571035.117RemappedNW_003571035.1
NW_004775427.1Chr4|NW_004775427.124RemappedNW_004775427.1
NW_003315917.2Chr5|NW_003315917.211RemappedNW_003315917.2
NW_003315918.1Chr5|NW_003315918.115RemappedNW_003315918.1
NW_003315919.1Chr5|NW_003315919.113RemappedNW_003315919.1
NW_003315920.1Chr5|NW_003315920.111RemappedNW_003315920.1
NW_003571036.1Chr5|NW_003571036.115RemappedNW_003571036.1
NW_003871061.1Chr5|NW_003871061.111RemappedNW_003871061.1
NW_004775428.1Chr5|NW_004775428.135RemappedNW_004775428.1
NT_113891.2Chr6|NT_113891.21116RemappedNT_113891.2
NT_167244.1Chr6|NT_167244.155RemappedNT_167244.1
NT_167245.1Chr6|NT_167245.1918RemappedNT_167245.1
NT_167246.1Chr6|NT_167246.177RemappedNT_167246.1
NT_167247.1Chr6|NT_167247.11019RemappedNT_167247.1
NT_167248.1Chr6|NT_167248.11017RemappedNT_167248.1
NT_167249.1Chr6|NT_167249.1918RemappedNT_167249.1
NW_003315921.1Chr6|NW_003315921.111RemappedNW_003315921.1
NW_003871063.1Chr6|NW_003871063.111RemappedNW_003871063.1
NW_004070866.1Chr6|NW_004070866.1213RemappedNW_004070866.1
NW_004504300.1Chr6|NW_004504300.122RemappedNW_004504300.1
NW_003315922.2Chr7|NW_003315922.211RemappedNW_003315922.2
NW_003571038.1Chr7|NW_003571038.129RemappedNW_003571038.1
NW_003571039.1Chr7|NW_003571039.128RemappedNW_003571039.1
NW_003571040.1Chr7|NW_003571040.1824RemappedNW_003571040.1
NW_003571041.1Chr7|NW_003571041.110RemappedNW_003571041.1
NW_003871064.1Chr7|NW_003871064.1815RemappedNW_003871064.1
NW_004775430.1Chr7|NW_004775430.102RemappedNW_004775430.1
NW_003315923.1Chr8|NW_003315923.1616RemappedNW_003315923.1
NW_003571042.1Chr8|NW_003571042.1425RemappedNW_003571042.1
NW_004775431.1Chr8|NW_004775431.106RemappedNW_004775431.1
NW_003315925.1Chr9|NW_003315925.128RemappedNW_003315925.1
NW_003315930.1Chr9|NW_003315930.111RemappedNW_003315930.1
NW_003315931.1Chr9|NW_003315931.113RemappedNW_003315931.1
NW_003871067.1Chr9|NW_003871067.111RemappedNW_003871067.1
NW_004070868.1Chr9|NW_004070868.111RemappedNW_004070868.1
NW_004070869.1Chr9|NW_004070869.133RemappedNW_004070869.1
NW_003315934.1Chr10|NW_003315934.111RemappedNW_003315934.1
NW_003571043.1Chr10|NW_003571043.111RemappedNW_003571043.1
NW_003871068.1Chr10|NW_003871068.1414RemappedNW_003871068.1
NW_003871069.1Chr10|NW_003871069.111RemappedNW_003871069.1
NW_003871071.1Chr10|NW_003871071.113RemappedNW_003871071.1
NW_003315936.1Chr11|NW_003315936.116RemappedNW_003315936.1
NW_003571045.1Chr11|NW_003571045.111RemappedNW_003571045.1
NW_003871072.2Chr11|NW_003871072.233RemappedNW_003871072.2
NW_003871073.1Chr11|NW_003871073.116RemappedNW_003871073.1
NW_003871074.1Chr11|NW_003871074.111RemappedNW_003871074.1
NW_003871077.1Chr11|NW_003871077.122RemappedNW_003871077.1
NW_003871079.1Chr11|NW_003871079.111RemappedNW_003871079.1
NW_003871080.1Chr11|NW_003871080.111RemappedNW_003871080.1
NW_003871081.1Chr11|NW_003871081.111RemappedNW_003871081.1
NW_004070871.1Chr11|NW_004070871.133RemappedNW_004070871.1
NW_003315938.1Chr12|NW_003315938.112RemappedNW_003315938.1
NW_003315939.1Chr12|NW_003315939.117RemappedNW_003315939.1
NW_003315940.1Chr12|NW_003315940.125RemappedNW_003315940.1
NW_003315941.1Chr12|NW_003315941.113RemappedNW_003315941.1
NW_003315942.2Chr12|NW_003315942.211RemappedNW_003315942.2
NW_003571048.1Chr12|NW_003571048.122RemappedNW_003571048.1
NW_003871083.2Chr12|NW_003871083.211RemappedNW_003871083.2
NW_004504303.2Chr12|NW_004504303.211RemappedNW_004504303.2
NW_004166863.1Chr14|NW_004166863.11131RemappedNW_004166863.1
NW_003315943.1Chr15|NW_003315943.104RemappedNW_003315943.1
NW_003315944.1Chr15|NW_003315944.149RemappedNW_003315944.1
NW_003871084.1Chr15|NW_003871084.111RemappedNW_003871084.1
NW_003315946.1Chr16|NW_003315946.114RemappedNW_003315946.1
NT_167251.1Chr17|NT_167251.134RemappedNT_167251.1
NW_003315947.1Chr17|NW_003315947.134RemappedNW_003315947.1
NW_003315948.2Chr17|NW_003315948.222RemappedNW_003315948.2
NW_003315949.1Chr17|NW_003315949.105RemappedNW_003315949.1
NW_003315950.2Chr17|NW_003315950.233RemappedNW_003315950.2
NW_003315953.1Chr17|NW_003315953.122RemappedNW_003315953.1
NW_003315954.1Chr17|NW_003315954.127RemappedNW_003315954.1
NW_003315955.1Chr17|NW_003315955.122RemappedNW_003315955.1
NW_003571052.1Chr17|NW_003571052.116RemappedNW_003571052.1
NW_003871086.1Chr17|NW_003871086.111RemappedNW_003871086.1
NW_003871087.1Chr17|NW_003871087.129RemappedNW_003871087.1
NW_003871090.1Chr17|NW_003871090.122RemappedNW_003871090.1
NW_003871092.1Chr17|NW_003871092.111RemappedNW_003871092.1
NW_003871093.1Chr17|NW_003871093.106RemappedNW_003871093.1
NW_004070872.2Chr17|NW_004070872.2513RemappedNW_004070872.2
NW_004166864.2Chr17|NW_004166864.211RemappedNW_004166864.2
NW_003315956.1Chr18|NW_003315956.136RemappedNW_003315956.1
NW_003315957.1Chr18|NW_003315957.113RemappedNW_003315957.1
NW_003315958.1Chr18|NW_003315958.123RemappedNW_003315958.1
NW_003315959.1Chr18|NW_003315959.112RemappedNW_003315959.1
NW_003315960.1Chr18|NW_003315960.111RemappedNW_003315960.1
NW_003315961.1Chr18|NW_003315961.134RemappedNW_003315961.1
NW_003315962.1Chr19|NW_003315962.122RemappedNW_003315962.1
NW_003315963.1Chr19|NW_003315963.128RemappedNW_003315963.1
NW_003315965.1Chr19|NW_003315965.124RemappedNW_003315965.1
NW_003571053.2Chr19|NW_003571053.212RemappedNW_003571053.2
NW_003571060.1Chr19|NW_003571060.133RemappedNW_003571060.1
NW_003571061.1Chr19|NW_003571061.101RemappedNW_003571061.1
NW_003871094.1Chr19|NW_003871094.1310RemappedNW_003871094.1
NW_004775434.1Chr19|NW_004775434.133RemappedNW_004775434.1
NW_003315966.1Chr20|NW_003315966.113RemappedNW_003315966.1
NW_003315967.1Chr21|NW_003315967.117RemappedNW_003315967.1
NW_003315968.1Chr21|NW_003315968.124RemappedNW_003315968.1
NW_003315969.1Chr21|NW_003315969.111RemappedNW_003315969.1
NW_003315970.1Chr21|NW_003315970.118RemappedNW_003315970.1
NW_003315971.2Chr22|NW_003315971.214RemappedNW_003315971.2
NW_003315972.1Chr22|NW_003315972.111RemappedNW_003315972.1
NW_003871096.1Chr22|NW_003871096.111RemappedNW_003871096.1
NW_003871098.1ChrX|NW_003871098.122RemappedNW_003871098.1
NW_003871099.1ChrX|NW_003871099.111RemappedNW_003871099.1
NW_003871100.1ChrX|NW_003871100.133RemappedNW_003871100.1
NW_003871103.3ChrX|NW_003871103.31039RemappedNW_003871103.3
NW_004070877.1ChrX|NW_004070877.11021RemappedNW_004070877.1
NW_004070879.1ChrX|NW_004070879.122RemappedNW_004070879.1
NW_004070880.2ChrX|NW_004070880.21639RemappedNW_004070880.2
NW_004070881.1ChrX|NW_004070881.111RemappedNW_004070881.1
NW_004070882.1ChrX|NW_004070882.135RemappedNW_004070882.1
NW_004070883.1ChrX|NW_004070883.114RemappedNW_004070883.1
NW_004070885.1ChrX|NW_004070885.1215RemappedNW_004070885.1
NW_004070886.1ChrX|NW_004070886.117RemappedNW_004070886.1
NW_004070887.1ChrX|NW_004070887.148RemappedNW_004070887.1
NW_004070888.1ChrX|NW_004070888.126RemappedNW_004070888.1
NW_004070889.1ChrX|NW_004070889.134RemappedNW_004070889.1
NW_004070890.2ChrX|NW_004070890.22141RemappedNW_004070890.2
NW_004070891.1ChrX|NW_004070891.133RemappedNW_004070891.1
NW_004070892.1ChrX|NW_004070892.1719RemappedNW_004070892.1
NW_004070893.1ChrX|NW_004070893.111RemappedNW_004070893.1
NW_004166866.1ChrX|NW_004166866.1218RemappedNW_004166866.1
Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000001.8Chr1580919SubmittedNC_000001.8
NC_000002.9Chr2642861SubmittedNC_000002.9
NC_000003.9Chr3477644SubmittedNC_000003.9
NC_000004.9Chr4437622SubmittedNC_000004.9
NC_000005.8Chr5452624SubmittedNC_000005.8
NC_000006.9Chr6412582SubmittedNC_000006.9
NC_000007.11Chr7395641SubmittedNC_000007.11
NC_000008.9Chr8383638SubmittedNC_000008.9
NC_000009.9Chr9309417SubmittedNC_000009.9
NC_000010.8Chr10335432SubmittedNC_000010.8
NC_000011.8Chr11365535SubmittedNC_000011.8
NC_000012.9Chr12356494SubmittedNC_000012.9
NC_000013.9Chr13232295SubmittedNC_000013.9
NC_000014.7Chr14239337SubmittedNC_000014.7
NC_000015.8Chr15230327SubmittedNC_000015.8
NC_000016.8Chr16226359SubmittedNC_000016.8
NC_000017.9Chr17220360SubmittedNC_000017.9
NC_000018.8Chr18193251SubmittedNC_000018.8
NC_000019.8Chr19163294SubmittedNC_000019.8
NC_000020.9Chr20188259SubmittedNC_000020.9
NC_000021.7Chr2192115SubmittedNC_000021.7
NC_000022.8Chr22110199SubmittedNC_000022.8
NC_000023.8ChrX378612SubmittedNC_000023.8
NC_000024.7ChrY57SubmittedNC_000024.7
NT_077949.1Chr1|NT_077949.1410SubmittedNT_077949.1
NT_077964.3Chr1|NT_077964.322SubmittedNT_077964.3
NT_077970.1Chr1|NT_077970.111SubmittedNT_077970.1
NT_079486.1Chr1|NT_079486.111SubmittedNT_079486.1
NT_077995.1Chr2|NT_077995.1213SubmittedNT_077995.1
NT_078016.3Chr4|NT_078016.311SubmittedNT_078016.3
NT_091700.1Chr4|NT_091700.124SubmittedNT_091700.1
NT_078020.3Chr6|NT_078020.3316SubmittedNT_078020.3
NT_079515.1Chr7|NT_079515.1113SubmittedNT_079515.1
NT_079516.1Chr7|NT_079516.1333SubmittedNT_079516.1
NT_086714.1Chr7|NT_086714.114SubmittedNT_086714.1
NT_078074.1Chr9|NT_078074.111SubmittedNT_078074.1
NT_091701.1Chr12|NT_091701.114SubmittedNT_091701.1
NT_079546.1Chr15|NT_079546.123SubmittedNT_079546.1
NT_079547.1Chr15|NT_079547.122SubmittedNT_079547.1
NT_078102.1Chr17|NT_078102.111SubmittedNT_078102.1
NT_079556.1Chr17|NT_079556.111SubmittedNT_079556.1
NT_079557.1Chr17|NT_079557.126SubmittedNT_079557.1
NT_079558.1Chr17|NT_079558.112SubmittedNT_079558.1
NT_079559.1Chr17|NT_079559.112SubmittedNT_079559.1
NT_079560.2Chr17|NT_079560.212SubmittedNT_079560.2
NT_079561.1Chr17|NT_079561.112SubmittedNT_079561.1
NT_079563.1Chr17|NT_079563.111SubmittedNT_079563.1
NT_079564.1Chr17|NT_079564.111SubmittedNT_079564.1
NT_079565.2Chr17|NT_079565.211SubmittedNT_079565.2
NT_079566.1Chr17|NT_079566.122SubmittedNT_079566.1
NT_079567.1Chr17|NT_079567.111SubmittedNT_079567.1
NT_079568.1Chr17|NT_079568.111SubmittedNT_079568.1
NT_079569.2Chr17|NT_079569.211SubmittedNT_079569.2
NT_079570.1Chr17|NT_079570.137SubmittedNT_079570.1
NT_091702.1Chr17|NT_091702.111SubmittedNT_091702.1
NT_086901.1Chr19|NT_086901.124SubmittedNT_086901.1
NT_078109.1ChrX|NT_078109.123SubmittedNT_078109.1
NT_078110.2ChrX|NT_078110.224SubmittedNT_078110.2
NT_078116.3ChrX|NT_078116.314SubmittedNT_078116.3
NT_079575.1ChrX|NT_079575.111SubmittedNT_079575.1
NT_079578.2ChrX|NT_079578.211SubmittedNT_079578.2

Variant Region remap statusVariant Call remap status
Sequence IDChrVariant Regions on sourcePerfectGoodPassFailMultVariant Calls on sourcePerfectGoodPassFailMult
NC_000001.8Chr158055145020919818836057
NC_000002.9Chr26426243906861798542016
NC_000003.9Chr3477463400106446001214018
NC_000004.9Chr4437425500762259650021
NC_000005.8Chr54524362509624587311221
NC_000006.9Chr6412391320165825201214036
NC_000007.11Chr7395370320206415572711046
NC_000008.9Chr838336185096385223535046
NC_000009.9Chr93092961228417382210716
NC_000010.8Chr10335323130843240714020
NC_000011.8Chr113653490101553550901025
NC_000012.9Chr12356346020849447103020
NC_000013.9Chr1323223200002952950000
NC_000014.7Chr142392262001133730330031
NC_000015.8Chr152302202305327291517014
NC_000016.8Chr1622622410013593541004
NC_000017.9Chr17220188740213602891312046
NC_000018.8Chr181931811001125123110019
NC_000019.8Chr191631470301329426005029
NC_000020.9Chr2018818610012592551003
NC_000021.7Chr21928700051159500020
NC_000022.8Chr2211010241031991866106
NC_000023.8ChrX37827631008961236011240217
NC_000024.7ChrY540100750200
Variant Region remap statusVariant Call remap status
Sequence IDChrVariant Regions on sourcePerfectGoodPassFailMultVariant Calls on sourcePerfectGoodPassFailMult
NC_000001.8Chr158051623643191971852421889
NC_000002.9Chr26425911790258617263145059
NC_000003.9Chr34774411030236445582212052
NC_000004.9Chr4437405122018622549233047
NC_000005.8Chr545241864123624545810358
NC_000006.9Chr641237079026582477949146
NC_000007.11Chr73953571141226415223233450
NC_000008.9Chr838331510625063841522567138
NC_000009.9Chr9309296231741737837920
NC_000010.8Chr103353215306432399101049
NC_000011.8Chr11365328140023535459141061
NC_000012.9Chr123563273102549441338070
NC_000013.9Chr132322192101029526124028
NC_000014.7Chr1423920772122337245178166
NC_000015.8Chr1523020654015327265724031
NC_000016.8Chr1622620162017359293142050
NC_000017.9Chr172201681160353602221834383
NC_000018.8Chr181931703101925120831039
NC_000019.8Chr1916313181023294215151063
NC_000020.9Chr2018817761042592357728
NC_000021.7Chr21927580091158280025
NC_000022.8Chr22110821530101991183313035
NC_000023.8ChrX3782936615136123761537418
NC_000024.7ChrY530200740300

Samplesets

Number of Samplesets: 1

Description:
Eight individuals plus 1 Control
Size:
9
Organisms:
Homo sapiens
Sampleset Phenotype(s):
None reported
  • Download Samples as CSV file
  • Samples for sampleset 1
    Sample IDCell TypeSubject ID SexEthnicitySubject AgeSubject Phenotype
    SAMN00001588B-LymphocyteNA18517FemaleYORUBANot reported
    NA12156B-LymphocyteNA12156FemaleUTAH/MORMON81 YearsNot reported
    NA18507B-LymphocyteNA18507MaleYORUBANot reported
    SAMN00000376B-LymphocyteNA15510FemaleNot reported
    NA12878B-LymphocyteNA12878FemaleUTAH/MORMONNot reported
    NA19129B-LymphocyteNA19129FemaleYORUBANot reported
    NA18956B-LymphocyteNA18956FemaleJAPANESENot reported
    NA19240B-LymphocyteNA19240FemaleYORUBANot reported
    NA18555B-LymphocyteNA18555FemaleHAN CHINESENot reported

    Experimental Details

    Experiment IDTypeMethodAnalysisPlatformsDataNumber of Variant Calls
    1DiscoverySequencingPaired-end mappingCapillaryABC10, ABC11, ABC12, ABC13, ABC14, ABC7, ABC8, ABC9, WI210,950
    2ValidationSequencingSequence alignment235
    3ValidationMultiple complete digestionMCD analysis1,621
    4ValidationSequencingOne end anchored assembly560
    5ValidationOligo aCGHProbe signal intensity687
    6ValidationOligo aCGHProbe signal intensity882
    7ValidationFISHManual observation26

    Validations

    Experiment IDMethodAnalysisNumber of Variant Calls Validated
    2SequencingSequence alignment235
    3Multiple complete digestionMCD analysis1,621
    4SequencingOne end anchored assembly560
    5Oligo aCGHProbe signal intensity687
    6Oligo aCGHProbe signal intensity882
    7FISHManual observation26
    Support Center