nstd200 (Abel et al. 2020)

Organism:
Human
Study Type:
Control Set
Submitter:
NCBI dbVar Curated 
Description:
We used a scalable pipeline to map and characterize structural variants in 17,795 deeply sequenced human genomes. We publicly release site-frequency data to create the largest, to our knowledge, whole-genome-sequencing-based structural variant resource so far. On average, individuals carry 2.9 rare structural variants that alter coding regions; these variants affect the dosage or structure of 4.2 genes and account for 4.0-11.2% of rare high-impact coding alleles. Using a computational model, we estimate that structural variants account for 17.2% of rare alleles genome-wide, with predicted deleterious effects that are equivalent to loss-of-function coding alleles; approximately 90% of such structural variants are noncoding deletions (mean 19.1 per genome). We report 158,991 ultra-rare structural variants and show that 2% of individuals carry ultra-rare megabase-scale structural variants, nearly half of which are balanced or complex rearrangements. Finally, we infer the dosage sensitivity of genes and noncoding elements, and reveal trends that relate to element class and conservation. See Variant Summary counts for nstd200 in dbVar Variant Summary.
Publication(s):
Abel et al. 2020

Detailed Information: Download 299092 Variant Regions, Download 299092 Variant Calls, Download Both, FTP

Variant Summary

Assembly used for analysis:
Submitted; Remapped: GRCh38.p13 (hg38)
Submitted; Remapped: GRCh37.p13 (hg19)

Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000001.11Chr122,48822,488Submitted; RemappedNC_000001.11
NC_000002.12Chr223,06723,067Submitted; RemappedNC_000002.12
NC_000003.12Chr320,33620,336Submitted; RemappedNC_000003.12
NC_000004.12Chr419,04619,046Submitted; RemappedNC_000004.12
NC_000005.10Chr518,13018,130Submitted; RemappedNC_000005.10
NC_000006.12Chr617,55717,557Submitted; RemappedNC_000006.12
NC_000007.14Chr718,34318,343Submitted; RemappedNC_000007.14
NC_000008.11Chr815,42515,425Submitted; RemappedNC_000008.11
NC_000009.12Chr912,25012,250Submitted; RemappedNC_000009.12
NC_000010.11Chr1013,59913,599Submitted; RemappedNC_000010.11
NC_000011.10Chr1114,75514,755Submitted; RemappedNC_000011.10
NC_000012.12Chr1214,71414,714Submitted; RemappedNC_000012.12
NC_000013.11Chr139,6139,613Submitted; RemappedNC_000013.11
NC_000014.9Chr149,5239,523Submitted; RemappedNC_000014.9
NC_000015.10Chr157,9217,921Submitted; RemappedNC_000015.10
NC_000016.10Chr1610,38910,389Submitted; RemappedNC_000016.10
NC_000017.11Chr179,8379,837Submitted; RemappedNC_000017.11
NC_000018.10Chr187,6487,648Submitted; RemappedNC_000018.10
NC_000019.10Chr1910,71310,713Submitted; RemappedNC_000019.10
NC_000020.11Chr207,5947,594Submitted; RemappedNC_000020.11
NC_000021.9Chr213,9353,935Submitted; RemappedNC_000021.9
NC_000022.11Chr224,7934,793Submitted; RemappedNC_000022.11
NC_000023.11ChrX9,7039,703Submitted; RemappedNC_000023.11
NC_000024.10ChrY687687Submitted; RemappedNC_000024.10
GL000219.1Unplaced|GL000219.155RemappedGL000219.1
NT_187514.1Chr1|NT_187514.177RemappedNT_187514.1
NT_187515.1Chr1|NT_187515.11313RemappedNT_187515.1
NT_187516.1Chr1|NT_187516.11414RemappedNT_187516.1
NT_187518.1Chr1|NT_187518.144RemappedNT_187518.1
NT_187519.1Chr1|NT_187519.13434RemappedNT_187519.1
NT_187521.1Chr1|NT_187521.111RemappedNT_187521.1
NT_187646.1Chr1|NT_187646.144RemappedNT_187646.1
NW_003315905.1Chr1|NW_003315905.11111RemappedNW_003315905.1
NW_003315906.1Chr1|NW_003315906.133RemappedNW_003315906.1
NW_003315907.2Chr1|NW_003315907.21111RemappedNW_003315907.2
NW_009646194.1Chr1|NW_009646194.166RemappedNW_009646194.1
NW_009646196.1Chr1|NW_009646196.11313RemappedNW_009646196.1
NW_011332687.1Chr1|NW_011332687.11111RemappedNW_011332687.1
NW_011332688.1Chr1|NW_011332688.12020RemappedNW_011332688.1
NW_012132914.1Chr1|NW_012132914.177RemappedNW_012132914.1
NW_014040925.1Chr1|NW_014040925.199RemappedNW_014040925.1
NW_014040926.1Chr1|NW_014040926.12222RemappedNW_014040926.1
NW_014040927.1Chr1|NW_014040927.11414RemappedNW_014040927.1
NW_017852928.1Chr1|NW_017852928.11919RemappedNW_017852928.1
NW_018654706.1Chr1|NW_018654706.12424RemappedNW_018654706.1
NW_018654707.1Chr1|NW_018654707.144RemappedNW_018654707.1
NW_018654708.1Chr1|NW_018654708.11010RemappedNW_018654708.1
NW_019805487.1Chr1|NW_019805487.144RemappedNW_019805487.1
NT_187522.1Chr2|NT_187522.133RemappedNT_187522.1
NT_187523.1Chr2|NT_187523.12828RemappedNT_187523.1
NT_187524.1Chr2|NT_187524.133RemappedNT_187524.1
NT_187525.1Chr2|NT_187525.188RemappedNT_187525.1
NT_187526.1Chr2|NT_187526.155RemappedNT_187526.1
NT_187527.1Chr2|NT_187527.11818RemappedNT_187527.1
NT_187528.1Chr2|NT_187528.122RemappedNT_187528.1
NT_187529.1Chr2|NT_187529.11515RemappedNT_187529.1
NT_187530.1Chr2|NT_187530.133RemappedNT_187530.1
NT_187531.1Chr2|NT_187531.133RemappedNT_187531.1
NT_187647.1Chr2|NT_187647.12828RemappedNT_187647.1
NT_187648.1Chr2|NT_187648.133RemappedNT_187648.1
NW_003315908.1Chr2|NW_003315908.155RemappedNW_003315908.1
NW_003315909.1Chr2|NW_003315909.177RemappedNW_003315909.1
NW_003571033.2Chr2|NW_003571033.244RemappedNW_003571033.2
NW_011332689.1Chr2|NW_011332689.199RemappedNW_011332689.1
NW_011332690.1Chr2|NW_011332690.12121RemappedNW_011332690.1
NW_012132915.1Chr2|NW_012132915.13131RemappedNW_012132915.1
NW_015495299.1Chr2|NW_015495299.12727RemappedNW_015495299.1
NW_018654709.1Chr2|NW_018654709.144RemappedNW_018654709.1
NW_018654710.1Chr2|NW_018654710.199RemappedNW_018654710.1
NT_187678.1Chr3|NT_187678.11010RemappedNT_187678.1
NT_187688.1Chr3|NT_187688.11010RemappedNT_187688.1
NT_187689.1Chr3|NT_187689.11010RemappedNT_187689.1
NT_187690.1Chr3|NT_187690.11010RemappedNT_187690.1
NT_187691.1Chr3|NT_187691.11010RemappedNT_187691.1
NT_187532.1Chr3|NT_187532.177RemappedNT_187532.1
NT_187533.1Chr3|NT_187533.144RemappedNT_187533.1
NT_187534.1Chr3|NT_187534.11212RemappedNT_187534.1
NT_187535.1Chr3|NT_187535.11010RemappedNT_187535.1
NT_187536.1Chr3|NT_187536.11515RemappedNT_187536.1
NT_187537.1Chr3|NT_187537.11212RemappedNT_187537.1
NT_187538.1Chr3|NT_187538.199RemappedNT_187538.1
NT_187539.1Chr3|NT_187539.188RemappedNT_187539.1
NT_187649.1Chr3|NT_187649.11010RemappedNT_187649.1
NW_003315913.1Chr3|NW_003315913.188RemappedNW_003315913.1
NW_003871060.2Chr3|NW_003871060.255RemappedNW_003871060.2
NW_009646197.1Chr3|NW_009646197.11616RemappedNW_009646197.1
NW_011332691.1Chr3|NW_011332691.12020RemappedNW_011332691.1
NW_012132916.1Chr3|NW_012132916.11818RemappedNW_012132916.1
NW_017363813.1Chr3|NW_017363813.11313RemappedNW_017363813.1
NW_018654711.1Chr3|NW_018654711.155RemappedNW_018654711.1
NW_019805488.1Chr3|NW_019805488.188RemappedNW_019805488.1
NW_019805489.1Chr3|NW_019805489.199RemappedNW_019805489.1
NW_019805490.1Chr3|NW_019805490.166RemappedNW_019805490.1
NW_019805491.1Chr3|NW_019805491.155RemappedNW_019805491.1
NW_019805492.1Chr3|NW_019805492.155RemappedNW_019805492.1
NT_187679.1Chr4|NT_187679.13030RemappedNT_187679.1
NT_187540.1Chr4|NT_187540.177RemappedNT_187540.1
NT_187541.1Chr4|NT_187541.122RemappedNT_187541.1
NT_187542.1Chr4|NT_187542.166RemappedNT_187542.1
NT_187543.1Chr4|NT_187543.11919RemappedNT_187543.1
NT_187544.1Chr4|NT_187544.166RemappedNT_187544.1
NT_187545.1Chr4|NT_187545.11111RemappedNT_187545.1
NT_187650.1Chr4|NT_187650.12020RemappedNT_187650.1
NW_003315914.1Chr4|NW_003315914.166RemappedNW_003315914.1
NW_003315915.1Chr4|NW_003315915.11414RemappedNW_003315915.1
NW_013171799.1Chr4|NW_013171799.122RemappedNW_013171799.1
NW_013171800.1Chr4|NW_013171800.11010RemappedNW_013171800.1
NW_013171801.1Chr4|NW_013171801.144RemappedNW_013171801.1
NW_017363814.1Chr4|NW_017363814.11111RemappedNW_017363814.1
NT_187546.1Chr5|NT_187546.122RemappedNT_187546.1
NT_187547.1Chr5|NT_187547.11111RemappedNT_187547.1
NT_187548.1Chr5|NT_187548.12222RemappedNT_187548.1
NT_187549.1Chr5|NT_187549.144RemappedNT_187549.1
NT_187550.1Chr5|NT_187550.11212RemappedNT_187550.1
NT_187551.1Chr5|NT_187551.155RemappedNT_187551.1
NT_187651.1Chr5|NT_187651.199RemappedNT_187651.1
NT_187652.1Chr5|NT_187652.111RemappedNT_187652.1
NW_003315917.2Chr5|NW_003315917.23333RemappedNW_003315917.2
NW_003315918.1Chr5|NW_003315918.144RemappedNW_003315918.1
NW_003315919.1Chr5|NW_003315919.199RemappedNW_003315919.1
NW_003315920.1Chr5|NW_003315920.188RemappedNW_003315920.1
NW_003571036.1Chr5|NW_003571036.155RemappedNW_003571036.1
NW_009646199.1Chr5|NW_009646199.188RemappedNW_009646199.1
NW_016107297.1Chr5|NW_016107297.188RemappedNW_016107297.1
NW_016107298.1Chr5|NW_016107298.14646RemappedNW_016107298.1
NW_018654712.1Chr5|NW_018654712.177RemappedNW_018654712.1
NT_187692.1Chr6|NT_187692.111RemappedNT_187692.1
NT_187552.1Chr6|NT_187552.199RemappedNT_187552.1
NT_187553.1Chr6|NT_187553.13030RemappedNT_187553.1
NT_187554.1Chr6|NT_187554.144RemappedNT_187554.1
NT_187555.1Chr6|NT_187555.11111RemappedNT_187555.1
NT_187556.1Chr6|NT_187556.13333RemappedNT_187556.1
NT_187557.1Chr6|NT_187557.144RemappedNT_187557.1
NW_003315921.1Chr6|NW_003315921.188RemappedNW_003315921.1
NW_004166862.2Chr6|NW_004166862.21212RemappedNW_004166862.2
NW_009646200.1Chr6|NW_009646200.12020RemappedNW_009646200.1
NW_012132918.1Chr6|NW_012132918.13131RemappedNW_012132918.1
NW_013171802.1Chr6|NW_013171802.177RemappedNW_013171802.1
NW_013171803.1Chr6|NW_013171803.144RemappedNW_013171803.1
NW_017363815.1Chr6|NW_017363815.166RemappedNW_017363815.1
NW_018654713.1Chr6|NW_018654713.12222RemappedNW_018654713.1
NT_187558.1Chr7|NT_187558.12121RemappedNT_187558.1
NT_187559.1Chr7|NT_187559.199RemappedNT_187559.1
NT_187560.1Chr7|NT_187560.13535RemappedNT_187560.1
NT_187561.1Chr7|NT_187561.133RemappedNT_187561.1
NT_187563.1Chr7|NT_187563.11515RemappedNT_187563.1
NT_187564.1Chr7|NT_187564.11010RemappedNT_187564.1
NW_003315922.2Chr7|NW_003315922.233RemappedNW_003315922.2
NW_012132919.1Chr7|NW_012132919.188RemappedNW_012132919.1
NW_017852929.1Chr7|NW_017852929.166RemappedNW_017852929.1
NW_017852930.1Chr7|NW_017852930.11212RemappedNW_017852930.1
NW_018654714.1Chr7|NW_018654714.11010RemappedNW_018654714.1
NW_018654715.1Chr7|NW_018654715.11010RemappedNW_018654715.1
NW_019805493.1Chr7|NW_019805493.11212RemappedNW_019805493.1
NT_187680.1Chr8|NT_187680.11717RemappedNT_187680.1
NT_187565.1Chr8|NT_187565.12929RemappedNT_187565.1
NT_187566.1Chr8|NT_187566.11717RemappedNT_187566.1
NT_187567.1Chr8|NT_187567.11515RemappedNT_187567.1
NT_187568.1Chr8|NT_187568.12424RemappedNT_187568.1
NT_187569.1Chr8|NT_187569.11212RemappedNT_187569.1
NT_187571.1Chr8|NT_187571.12020RemappedNT_187571.1
NT_187572.1Chr8|NT_187572.11212RemappedNT_187572.1
NT_187573.1Chr8|NT_187573.11313RemappedNT_187573.1
NT_187574.1Chr8|NT_187574.155RemappedNT_187574.1
NT_187575.1Chr8|NT_187575.144RemappedNT_187575.1
NT_187577.1Chr8|NT_187577.12929RemappedNT_187577.1
NT_187654.1Chr8|NT_187654.12020RemappedNT_187654.1
NT_187655.1Chr8|NT_187655.11313RemappedNT_187655.1
NW_017852931.1Chr8|NW_017852931.166RemappedNW_017852931.1
NW_017852932.1Chr8|NW_017852932.11717RemappedNW_017852932.1
NW_018654716.1Chr8|NW_018654716.11212RemappedNW_018654716.1
NW_018654717.1Chr8|NW_018654717.1287287RemappedNW_018654717.1
NW_019805494.1Chr8|NW_019805494.155RemappedNW_019805494.1
NT_187578.1Chr9|NT_187578.155RemappedNT_187578.1
NW_003315928.1Chr9|NW_003315928.133RemappedNW_003315928.1
NW_003315929.1Chr9|NW_003315929.111RemappedNW_003315929.1
NW_003315930.1Chr9|NW_003315930.122RemappedNW_003315930.1
NW_003315931.1Chr9|NW_003315931.144RemappedNW_003315931.1
NW_009646201.1Chr9|NW_009646201.11919RemappedNW_009646201.1
NW_013171804.1Chr9|NW_013171804.11212RemappedNW_013171804.1
NW_013171805.1Chr9|NW_013171805.177RemappedNW_013171805.1
NT_187579.1Chr10|NT_187579.155RemappedNT_187579.1
NT_187580.1Chr10|NT_187580.155RemappedNT_187580.1
NW_003315934.1Chr10|NW_003315934.11010RemappedNW_003315934.1
NW_003315935.1Chr10|NW_003315935.11111RemappedNW_003315935.1
NW_009646202.1Chr10|NW_009646202.12020RemappedNW_009646202.1
NW_013171806.1Chr10|NW_013171806.11515RemappedNW_013171806.1
NW_013171807.1Chr10|NW_013171807.188RemappedNW_013171807.1
NT_187681.1Chr11|NT_187681.12424RemappedNT_187681.1
NT_187656.1Chr11|NT_187656.11212RemappedNT_187656.1
NT_187657.1Chr11|NT_187657.12121RemappedNT_187657.1
NT_187581.1Chr11|NT_187581.12525RemappedNT_187581.1
NT_187582.1Chr11|NT_187582.122RemappedNT_187582.1
NT_187583.1Chr11|NT_187583.11313RemappedNT_187583.1
NT_187584.1Chr11|NT_187584.12323RemappedNT_187584.1
NT_187585.1Chr11|NT_187585.188RemappedNT_187585.1
NT_187586.1Chr11|NT_187586.11919RemappedNT_187586.1
NW_003315936.1Chr11|NW_003315936.188RemappedNW_003315936.1
NW_003871073.1Chr11|NW_003871073.155RemappedNW_003871073.1
NW_003871074.1Chr11|NW_003871074.11010RemappedNW_003871074.1
NW_009646203.1Chr11|NW_009646203.11111RemappedNW_009646203.1
NW_011332695.1Chr11|NW_011332695.11313RemappedNW_011332695.1
NW_013171808.1Chr11|NW_013171808.177RemappedNW_013171808.1
NW_015148966.1Chr11|NW_015148966.11818RemappedNW_015148966.1
NW_017363816.1Chr11|NW_017363816.133RemappedNW_017363816.1
NW_019805495.1Chr11|NW_019805495.11414RemappedNW_019805495.1
NW_019805496.1Chr11|NW_019805496.11111RemappedNW_019805496.1
NW_019805497.1Chr11|NW_019805497.11515RemappedNW_019805497.1
NW_019805498.1Chr11|NW_019805498.144RemappedNW_019805498.1
NT_187658.1Chr12|NT_187658.12323RemappedNT_187658.1
NT_187587.1Chr12|NT_187587.11111RemappedNT_187587.1
NT_187588.1Chr12|NT_187588.122RemappedNT_187588.1
NT_187589.1Chr12|NT_187589.122RemappedNT_187589.1
NT_187590.1Chr12|NT_187590.133RemappedNT_187590.1
NT_187591.1Chr12|NT_187591.111RemappedNT_187591.1
NW_003315938.1Chr12|NW_003315938.155RemappedNW_003315938.1
NW_003315939.2Chr12|NW_003315939.244RemappedNW_003315939.2
NW_003315940.1Chr12|NW_003315940.166RemappedNW_003315940.1
NW_003315941.1Chr12|NW_003315941.166RemappedNW_003315941.1
NW_003315942.2Chr12|NW_003315942.244RemappedNW_003315942.2
NW_003571050.1Chr12|NW_003571050.11818RemappedNW_003571050.1
NW_009646204.1Chr12|NW_009646204.166RemappedNW_009646204.1
NW_011332696.1Chr12|NW_011332696.13636RemappedNW_011332696.1
NW_011332697.1Chr12|NW_011332697.133RemappedNW_011332697.1
NW_013171809.1Chr12|NW_013171809.177RemappedNW_013171809.1
NW_015148967.1Chr12|NW_015148967.11313RemappedNW_015148967.1
NW_018654718.1Chr12|NW_018654718.14747RemappedNW_018654718.1
NW_018654719.1Chr12|NW_018654719.188RemappedNW_018654719.1
NW_018654720.1Chr12|NW_018654720.188RemappedNW_018654720.1
NW_019805499.1Chr12|NW_019805499.188RemappedNW_019805499.1
NT_187592.1Chr13|NT_187592.155RemappedNT_187592.1
NT_187595.1Chr13|NT_187595.155RemappedNT_187595.1
NT_187596.1Chr13|NT_187596.133RemappedNT_187596.1
NT_187597.1Chr13|NT_187597.144RemappedNT_187597.1
NW_009646205.1Chr13|NW_009646205.122RemappedNW_009646205.1
NW_011332699.1Chr13|NW_011332699.155RemappedNW_011332699.1
NW_011332700.1Chr13|NW_011332700.199RemappedNW_011332700.1
NW_013171810.1Chr13|NW_013171810.122RemappedNW_013171810.1
NW_013171811.1Chr13|NW_013171811.144RemappedNW_013171811.1
NT_187598.1Chr14|NT_187598.144RemappedNT_187598.1
NT_187599.1Chr14|NT_187599.199RemappedNT_187599.1
NT_187601.1Chr14|NT_187601.15353RemappedNT_187601.1
NW_018654721.1Chr14|NW_018654721.188RemappedNW_018654721.1
NW_018654722.1Chr14|NW_018654722.12424RemappedNW_018654722.1
NT_187659.1Chr15|NT_187659.188RemappedNT_187659.1
NT_187660.1Chr15|NT_187660.1126126RemappedNT_187660.1
NT_187605.1Chr15|NT_187605.11212RemappedNT_187605.1
NT_187606.1Chr15|NT_187606.144RemappedNT_187606.1
NW_003315944.2Chr15|NW_003315944.21010RemappedNW_003315944.2
NT_187607.1Chr16|NT_187607.18383RemappedNT_187607.1
NT_187608.1Chr16|NT_187608.11111RemappedNT_187608.1
NT_187609.1Chr16|NT_187609.166RemappedNT_187609.1
NT_187610.1Chr16|NT_187610.11616RemappedNT_187610.1
NW_003315945.1Chr16|NW_003315945.166RemappedNW_003315945.1
NW_003315946.1Chr16|NW_003315946.166RemappedNW_003315946.1
NW_012132921.1Chr16|NW_012132921.199RemappedNW_012132921.1
NW_013171812.1Chr16|NW_013171812.188RemappedNW_013171812.1
NW_013171813.1Chr16|NW_013171813.11010RemappedNW_013171813.1
NW_017852933.1Chr16|NW_017852933.14646RemappedNW_017852933.1
NW_018654723.1Chr16|NW_018654723.155RemappedNW_018654723.1
NW_019805500.1Chr16|NW_019805500.12626RemappedNW_019805500.1
NT_187662.1Chr17|NT_187662.13030RemappedNT_187662.1
NT_187663.1Chr17|NT_187663.14646RemappedNT_187663.1
NT_187664.1Chr17|NT_187664.11717RemappedNT_187664.1
NW_003871093.1Chr17|NW_003871093.155RemappedNW_003871093.1
NT_167251.2Chr17|NT_167251.222RemappedNT_167251.2
NT_187611.1Chr17|NT_187611.12828RemappedNT_187611.1
NT_187612.1Chr17|NT_187612.12121RemappedNT_187612.1
NT_187613.1Chr17|NT_187613.17777RemappedNT_187613.1
NT_187615.1Chr17|NT_187615.188RemappedNT_187615.1
NT_187616.1Chr17|NT_187616.133RemappedNT_187616.1
NW_003315952.3Chr17|NW_003315952.33636RemappedNW_003315952.3
NW_003315953.2Chr17|NW_003315953.233RemappedNW_003315953.2
NW_003315954.1Chr17|NW_003315954.155RemappedNW_003315954.1
NW_003315955.1Chr17|NW_003315955.11212RemappedNW_003315955.1
NW_003871091.1Chr17|NW_003871091.11717RemappedNW_003871091.1
NW_003871092.1Chr17|NW_003871092.144RemappedNW_003871092.1
NW_016107299.1Chr17|NW_016107299.155RemappedNW_016107299.1
NW_017363817.1Chr17|NW_017363817.13232RemappedNW_017363817.1
NW_017363818.1Chr17|NW_017363818.11313RemappedNW_017363818.1
NW_017363819.1Chr17|NW_017363819.11010RemappedNW_017363819.1
NW_019805501.1Chr17|NW_019805501.133RemappedNW_019805501.1
NT_187665.1Chr18|NT_187665.199RemappedNT_187665.1
NT_187666.1Chr18|NT_187666.11010RemappedNT_187666.1
NT_187617.1Chr18|NT_187617.199RemappedNT_187617.1
NT_187618.1Chr18|NT_187618.166RemappedNT_187618.1
NW_003315956.1Chr18|NW_003315956.11212RemappedNW_003315956.1
NW_003315957.1Chr18|NW_003315957.144RemappedNW_003315957.1
NW_003315958.1Chr18|NW_003315958.188RemappedNW_003315958.1
NW_003315959.1Chr18|NW_003315959.166RemappedNW_003315959.1
NW_003315960.1Chr18|NW_003315960.155RemappedNW_003315960.1
NW_003315961.1Chr18|NW_003315961.11010RemappedNW_003315961.1
NW_013171814.1Chr18|NW_013171814.11818RemappedNW_013171814.1
NW_014040928.1Chr18|NW_014040928.199RemappedNW_014040928.1
NW_018654724.1Chr18|NW_018654724.144RemappedNW_018654724.1
NW_019805502.1Chr18|NW_019805502.133RemappedNW_019805502.1
NW_019805503.1Chr18|NW_019805503.133RemappedNW_019805503.1
NW_003571061.2Chr19|NW_003571061.27272RemappedNW_003571061.2
NW_003571057.2Chr19|NW_003571057.25252RemappedNW_003571057.2
NW_003571058.2Chr19|NW_003571058.25252RemappedNW_003571058.2
NW_003571059.2Chr19|NW_003571059.25252RemappedNW_003571059.2
NW_003571060.1Chr19|NW_003571060.18383RemappedNW_003571060.1
NW_003571056.2Chr19|NW_003571056.25252RemappedNW_003571056.2
NW_003571055.2Chr19|NW_003571055.26868RemappedNW_003571055.2
NT_187619.1Chr19|NT_187619.133RemappedNT_187619.1
NT_187620.1Chr19|NT_187620.11616RemappedNT_187620.1
NT_187621.1Chr19|NT_187621.155RemappedNT_187621.1
NT_187622.1Chr19|NT_187622.11212RemappedNT_187622.1
NW_003315962.1Chr19|NW_003315962.14545RemappedNW_003315962.1
NW_003315963.1Chr19|NW_003315963.199RemappedNW_003315963.1
NW_003315964.2Chr19|NW_003315964.288RemappedNW_003315964.2
NW_003315965.1Chr19|NW_003315965.177RemappedNW_003315965.1
NW_003571054.1Chr19|NW_003571054.18282RemappedNW_003571054.1
NW_014040929.1Chr19|NW_014040929.13434RemappedNW_014040929.1
NT_187623.1Chr20|NT_187623.177RemappedNT_187623.1
NT_187624.1Chr20|NT_187624.11212RemappedNT_187624.1
NT_187625.1Chr20|NT_187625.122RemappedNT_187625.1
NW_003315966.2Chr20|NW_003315966.255RemappedNW_003315966.2
NT_187626.1Chr21|NT_187626.199RemappedNT_187626.1
NT_187627.1Chr21|NT_187627.199RemappedNT_187627.1
NT_187628.1Chr21|NT_187628.166RemappedNT_187628.1
NW_003315967.2Chr21|NW_003315967.255RemappedNW_003315967.2
NW_003315968.2Chr21|NW_003315968.21515RemappedNW_003315968.2
NW_003315969.2Chr21|NW_003315969.222RemappedNW_003315969.2
NW_003315970.2Chr21|NW_003315970.244RemappedNW_003315970.2
NT_187682.1Chr22|NT_187682.122RemappedNT_187682.1
NW_015148969.1Chr22|NW_015148969.199RemappedNW_015148969.1
NT_187629.1Chr22|NT_187629.11212RemappedNT_187629.1
NT_187630.1Chr22|NT_187630.11414RemappedNT_187630.1
NT_187631.1Chr22|NT_187631.133RemappedNT_187631.1
NT_187632.1Chr22|NT_187632.11414RemappedNT_187632.1
NW_003315972.2Chr22|NW_003315972.222RemappedNW_003315972.2
NT_187667.1ChrX|NT_187667.15252RemappedNT_187667.1
NW_017363820.1ChrX|NW_017363820.188RemappedNW_017363820.1
NT_187634.1ChrX|NT_187634.15252RemappedNT_187634.1
NT_187635.1ChrX|NT_187635.133RemappedNT_187635.1
NW_018654726.1ChrY|NW_018654726.122RemappedNW_018654726.1
NT_187361.1Chr1|NT_187361.111RemappedNT_187361.1
NW_009646195.1Chr1|NW_009646195.11717RemappedNW_009646195.1
NW_009646198.1Chr3|NW_009646198.111RemappedNW_009646198.1
NT_113793.3Chr4|NT_113793.333RemappedNT_113793.3
NT_187562.1Chr7|NT_187562.13434RemappedNT_187562.1
NT_187653.1Chr7|NT_187653.12121RemappedNT_187653.1
NT_187576.1Chr8|NT_187576.1102102RemappedNT_187576.1
NW_003571049.1Chr12|NW_003571049.199RemappedNW_003571049.1
NT_187593.1Chr13|NT_187593.122RemappedNT_187593.1
NT_187594.1Chr13|NT_187594.12525RemappedNT_187594.1
NW_011332698.1Chr13|NW_011332698.12222RemappedNW_011332698.1
NT_187600.1Chr14|NT_187600.1361361RemappedNT_187600.1
NT_187603.1Chr15|NT_187603.11010RemappedNT_187603.1
NW_011332701.1Chr15|NW_011332701.1132132RemappedNW_011332701.1
NT_187661.1Chr17|NT_187661.122RemappedNT_187661.1
NT_187614.1Chr17|NT_187614.19191RemappedNT_187614.1
NT_187693.1Chr19|NT_187693.1108108RemappedNT_187693.1
NW_009646206.1Chr19|NW_009646206.12121RemappedNW_009646206.1
NT_187633.1Chr22|NT_187633.12020RemappedNT_187633.1
NW_009646209.1ChrY|NW_009646209.111RemappedNW_009646209.1
Sequence IDChrNumber of Variant RegionsNumber of Variant CallsPlacement typeLink to graphical display
NC_000001.10Chr122,12022,120Submitted; RemappedNC_000001.10
NC_000002.11Chr222,89022,890Submitted; RemappedNC_000002.11
NC_000003.11Chr319,75119,751Submitted; RemappedNC_000003.11
NC_000004.11Chr419,04219,042Submitted; RemappedNC_000004.11
NC_000005.9Chr518,07618,076Submitted; RemappedNC_000005.9
NC_000006.11Chr617,34617,346Submitted; RemappedNC_000006.11
NC_000007.13Chr717,97017,970Submitted; RemappedNC_000007.13
NC_000008.10Chr815,36615,366Submitted; RemappedNC_000008.10
NC_000009.11Chr912,10112,101Submitted; RemappedNC_000009.11
NC_000010.10Chr1013,10113,101Submitted; RemappedNC_000010.10
NC_000011.9Chr1114,72614,726Submitted; RemappedNC_000011.9
NC_000012.11Chr1214,32914,329Submitted; RemappedNC_000012.11
NC_000013.10Chr139,4569,456Submitted; RemappedNC_000013.10
NC_000014.8Chr149,2379,237Submitted; RemappedNC_000014.8
NC_000015.9Chr157,8667,866Submitted; RemappedNC_000015.9
NC_000016.9Chr1610,19410,194Submitted; RemappedNC_000016.9
NC_000017.10Chr179,4709,470Submitted; RemappedNC_000017.10
NC_000018.9Chr187,6117,611Submitted; RemappedNC_000018.9
NC_000019.9Chr1910,53810,538Submitted; RemappedNC_000019.9
NC_000020.10Chr206,9346,934Submitted; RemappedNC_000020.10
NC_000021.8Chr213,8923,892Submitted; RemappedNC_000021.8
NC_000022.10Chr224,6144,614Submitted; RemappedNC_000022.10
NC_000023.10ChrX9,6599,659Submitted; RemappedNC_000023.10
NC_000024.9ChrY694694Submitted; RemappedNC_000024.9
NT_113923.1Unplaced|NT_113923.12222RemappedNT_113923.1
NT_167216.1Unplaced|NT_167216.166RemappedNT_167216.1
NT_167213.1Unplaced|NT_167213.133RemappedNT_167213.1
NT_167225.1Unplaced|NT_167225.133RemappedNT_167225.1
NT_167226.1Unplaced|NT_167226.155RemappedNT_167226.1
NT_167229.1Unplaced|NT_167229.111RemappedNT_167229.1
NT_167211.1Unplaced|NT_167211.155RemappedNT_167211.1
NT_167223.1Unplaced|NT_167223.144RemappedNT_167223.1
NT_167228.1Unplaced|NT_167228.144RemappedNT_167228.1
NT_167231.1Unplaced|NT_167231.122RemappedNT_167231.1
NT_167207.1Chr1|NT_167207.111RemappedNT_167207.1
NW_003315903.1Chr1|NW_003315903.166RemappedNW_003315903.1
NW_003315904.1Chr1|NW_003315904.144RemappedNW_003315904.1
NW_003571030.1Chr1|NW_003571030.11313RemappedNW_003571030.1
NW_003871055.3Chr1|NW_003871055.3231231RemappedNW_003871055.3
NW_003871056.3Chr1|NW_003871056.31616RemappedNW_003871056.3
NW_003871057.1Chr1|NW_003871057.13232RemappedNW_003871057.1
NW_004070863.1Chr1|NW_004070863.133RemappedNW_004070863.1
NW_004070864.2Chr1|NW_004070864.233RemappedNW_004070864.2
NW_004070865.1Chr1|NW_004070865.166RemappedNW_004070865.1
NW_003571032.1Chr2|NW_003571032.13939RemappedNW_003571032.1
NW_004504299.1Chr2|NW_004504299.13232RemappedNW_004504299.1
NW_003315910.1Chr3|NW_003315910.177RemappedNW_003315910.1
NW_003315912.1Chr3|NW_003315912.144RemappedNW_003315912.1
NW_003871058.1Chr3|NW_003871058.12626RemappedNW_003871058.1
NW_003871059.1Chr3|NW_003871059.199RemappedNW_003871059.1
NW_003871060.1Chr3|NW_003871060.177RemappedNW_003871060.1
NW_004775426.1Chr3|NW_004775426.12121RemappedNW_004775426.1
NT_113885.1Chr4|NT_113885.144RemappedNT_113885.1
NW_003315916.1Chr4|NW_003315916.177RemappedNW_003315916.1
NW_003571034.1Chr4|NW_003571034.11414RemappedNW_003571034.1
NW_003571035.1Chr4|NW_003571035.13131RemappedNW_003571035.1
NW_004775427.1Chr4|NW_004775427.16262RemappedNW_004775427.1
NW_003871061.1Chr5|NW_003871061.11111RemappedNW_003871061.1
NW_004775428.1Chr5|NW_004775428.14444RemappedNW_004775428.1
NT_167246.1Chr6|NT_167246.11212RemappedNT_167246.1
NT_167248.1Chr6|NT_167248.11212RemappedNT_167248.1
NT_167249.1Chr6|NT_167249.111RemappedNT_167249.1
NW_003871062.1Chr6|NW_003871062.11212RemappedNW_003871062.1
NW_004070866.1Chr6|NW_004070866.11010RemappedNW_004070866.1
NW_004504300.1Chr6|NW_004504300.14343RemappedNW_004504300.1
NW_004775429.1Chr6|NW_004775429.11212RemappedNW_004775429.1
NW_003571037.1Chr7|NW_003571037.13030RemappedNW_003571037.1
NW_003571038.1Chr7|NW_003571038.12121RemappedNW_003571038.1
NW_003571039.1Chr7|NW_003571039.199RemappedNW_003571039.1
NW_003571040.1Chr7|NW_003571040.13838RemappedNW_003571040.1
NW_003571041.1Chr7|NW_003571041.11212RemappedNW_003571041.1
NW_003871064.1Chr7|NW_003871064.1280280RemappedNW_003871064.1
NW_003871065.1Chr7|NW_003871065.13232RemappedNW_003871065.1
NW_004775430.1Chr7|NW_004775430.11010RemappedNW_004775430.1
NW_003315923.1Chr8|NW_003315923.14141RemappedNW_003315923.1
NW_003315924.1Chr8|NW_003315924.13333RemappedNW_003315924.1
NW_003571042.1Chr8|NW_003571042.15050RemappedNW_003571042.1
NW_003871066.2Chr8|NW_003871066.244RemappedNW_003871066.2
NW_004775431.1Chr8|NW_004775431.11818RemappedNW_004775431.1
NT_113914.1Chr9|NT_113914.133RemappedNT_113914.1
NT_113916.2Chr9|NT_113916.22323RemappedNT_113916.2
NW_003315925.1Chr9|NW_003315925.12929RemappedNW_003315925.1
NW_003315926.1Chr9|NW_003315926.11111RemappedNW_003315926.1
NW_003315927.1Chr9|NW_003315927.177RemappedNW_003315927.1
NW_003871067.1Chr9|NW_003871067.144RemappedNW_003871067.1
NW_004070867.1Chr9|NW_004070867.122RemappedNW_004070867.1
NW_004070868.1Chr9|NW_004070868.11010RemappedNW_004070868.1
NW_004070869.1Chr9|NW_004070869.12121RemappedNW_004070869.1
NW_004504301.1Chr9|NW_004504301.11010RemappedNW_004504301.1
NW_003315932.1Chr10|NW_003315932.11414RemappedNW_003315932.1
NW_003315933.1Chr10|NW_003315933.166RemappedNW_003315933.1
NW_003571043.1Chr10|NW_003571043.11919RemappedNW_003571043.1
NW_003871068.1Chr10|NW_003871068.15454RemappedNW_003871068.1
NW_003871069.1Chr10|NW_003871069.11212RemappedNW_003871069.1
NW_003871070.1Chr10|NW_003871070.166RemappedNW_003871070.1
NW_003871071.1Chr10|NW_003871071.13131RemappedNW_003871071.1
NW_004070870.1Chr10|NW_004070870.144RemappedNW_004070870.1
NW_004504302.1Chr10|NW_004504302.166RemappedNW_004504302.1
NW_004775432.1Chr10|NW_004775432.14242RemappedNW_004775432.1
NT_113921.2Chr11|NT_113921.211RemappedNT_113921.2
NW_003571045.1Chr11|NW_003571045.13535RemappedNW_003571045.1
NW_003571046.1Chr11|NW_003571046.11919RemappedNW_003571046.1
NW_003871072.2Chr11|NW_003871072.22323RemappedNW_003871072.2
NW_003871075.1Chr11|NW_003871075.11919RemappedNW_003871075.1
NW_003871076.1Chr11|NW_003871076.11717RemappedNW_003871076.1
NW_003871077.1Chr11|NW_003871077.11212RemappedNW_003871077.1
NW_003871078.1Chr11|NW_003871078.12323RemappedNW_003871078.1
NW_003871079.1Chr11|NW_003871079.11010RemappedNW_003871079.1
NW_003871080.1Chr11|NW_003871080.11515RemappedNW_003871080.1
NW_003871081.1Chr11|NW_003871081.177RemappedNW_003871081.1
NW_003871082.1Chr11|NW_003871082.11313RemappedNW_003871082.1
NW_004070871.1Chr11|NW_004070871.13838RemappedNW_004070871.1
NW_003315937.1Chr12|NW_003315937.12525RemappedNW_003315937.1
NW_003571048.1Chr12|NW_003571048.11515RemappedNW_003571048.1
NW_003871083.2Chr12|NW_003871083.22222RemappedNW_003871083.2
NW_004504303.2Chr12|NW_004504303.23737RemappedNW_004504303.2
NW_003571051.1Chr13|NW_003571051.111RemappedNW_003571051.1
NW_004166863.1Chr14|NW_004166863.1303303RemappedNW_004166863.1
NW_003871084.1Chr15|NW_003871084.12222RemappedNW_003871084.1
NW_003871085.1Chr16|NW_003871085.177RemappedNW_003871085.1
NT_113930.1Chr17|NT_113930.111RemappedNT_113930.1
NT_113941.1Chr17|NT_113941.111RemappedNT_113941.1
NT_113943.1Chr17|NT_113943.133RemappedNT_113943.1
NW_003315947.1Chr17|NW_003315947.14141RemappedNW_003315947.1
NW_003315948.2Chr17|NW_003315948.233RemappedNW_003315948.2
NW_003315949.1Chr17|NW_003315949.199RemappedNW_003315949.1
NW_003315950.2Chr17|NW_003315950.29595RemappedNW_003315950.2
NW_003315951.1Chr17|NW_003315951.122RemappedNW_003315951.1
NW_003315953.1Chr17|NW_003315953.122RemappedNW_003315953.1
NW_003571052.1Chr17|NW_003571052.13939RemappedNW_003571052.1
NW_003871087.1Chr17|NW_003871087.12727RemappedNW_003871087.1
NW_003871088.1Chr17|NW_003871088.13232RemappedNW_003871088.1
NW_003871089.1Chr17|NW_003871089.12121RemappedNW_003871089.1
NW_003871090.1Chr17|NW_003871090.11717RemappedNW_003871090.1
NW_004070872.2Chr17|NW_004070872.25050RemappedNW_004070872.2
NW_004166864.2Chr17|NW_004166864.21212RemappedNW_004166864.2
NW_004775433.1Chr17|NW_004775433.1207207RemappedNW_004775433.1
NT_113947.1Chr18|NT_113947.111RemappedNT_113947.1
NW_003571053.2Chr19|NW_003571053.29292RemappedNW_003571053.2
NW_003871094.1Chr19|NW_003871094.11818RemappedNW_003871094.1
NW_004166865.1Chr19|NW_004166865.1174174RemappedNW_004166865.1
NW_004775434.1Chr19|NW_004775434.15252RemappedNW_004775434.1
NW_003571063.2Chr20|NW_003571063.21515RemappedNW_003571063.2
NW_003871095.1Chr20|NW_003871095.166RemappedNW_003871095.1
NW_004504304.1Chr20|NW_004504304.12828RemappedNW_004504304.1
NW_003315968.1Chr21|NW_003315968.188RemappedNW_003315968.1
NW_003315970.1Chr21|NW_003315970.111RemappedNW_003315970.1
NW_004775435.1Chr21|NW_004775435.13030RemappedNW_004775435.1
NT_113961.1Chr22|NT_113961.122RemappedNT_113961.1
NW_003315972.1Chr22|NW_003315972.111RemappedNW_003315972.1
NW_003871096.1Chr22|NW_003871096.12121RemappedNW_003871096.1
NW_004070873.1Chr22|NW_004070873.111RemappedNW_004070873.1
NW_004070874.1Chr22|NW_004070874.155RemappedNW_004070874.1
NW_004070875.1Chr22|NW_004070875.133RemappedNW_004070875.1
NW_004070876.1Chr22|NW_004070876.122RemappedNW_004070876.1
NT_167212.1Chr22|NT_167212.133RemappedNT_167212.1
NT_167235.1Chr22|NT_167235.155RemappedNT_167235.1
NW_003571064.2ChrX|NW_003571064.28787RemappedNW_003571064.2
NW_003871098.1ChrX|NW_003871098.12525RemappedNW_003871098.1
NW_003871099.1ChrX|NW_003871099.11414RemappedNW_003871099.1
NW_003871100.1ChrX|NW_003871100.14646RemappedNW_003871100.1
NW_003871101.3ChrX|NW_003871101.32424RemappedNW_003871101.3
NW_003871103.3ChrX|NW_003871103.3141141RemappedNW_003871103.3
NW_004070877.1ChrX|NW_004070877.18282RemappedNW_004070877.1
NW_004070878.1ChrX|NW_004070878.12121RemappedNW_004070878.1
NW_004070879.1ChrX|NW_004070879.166RemappedNW_004070879.1
NW_004070880.2ChrX|NW_004070880.26565RemappedNW_004070880.2
NW_004070881.1ChrX|NW_004070881.12424RemappedNW_004070881.1
NW_004070882.1ChrX|NW_004070882.11717RemappedNW_004070882.1
NW_004070883.1ChrX|NW_004070883.177RemappedNW_004070883.1
NW_004070884.1ChrX|NW_004070884.133RemappedNW_004070884.1
NW_004070885.1ChrX|NW_004070885.11111RemappedNW_004070885.1
NW_004070886.1ChrX|NW_004070886.11111RemappedNW_004070886.1
NW_004070887.1ChrX|NW_004070887.13838RemappedNW_004070887.1
NW_004070888.1ChrX|NW_004070888.12424RemappedNW_004070888.1
NW_004070889.1ChrX|NW_004070889.12222RemappedNW_004070889.1
NW_004070890.2ChrX|NW_004070890.2186186RemappedNW_004070890.2
NW_004070891.1ChrX|NW_004070891.13030RemappedNW_004070891.1
NW_004070892.1ChrX|NW_004070892.11010RemappedNW_004070892.1
NW_004070893.1ChrX|NW_004070893.144RemappedNW_004070893.1
NW_004166866.1ChrX|NW_004166866.11313RemappedNW_004166866.1
GL000225.1Unplaced|GL000225.111SubmittedGL000225.1
GL000219.1Unplaced|GL000219.155SubmittedGL000219.1
GL000193.1Chr4|GL000193.111SubmittedGL000193.1
GL000198.1Chr9|GL000198.177SubmittedGL000198.1
GL000199.1Chr9|GL000199.122SubmittedGL000199.1
GL000210.1Chr21|GL000210.111SubmittedGL000210.1
GL000211.1Unplaced|GL000211.133SubmittedGL000211.1
GL000212.1Unplaced|GL000212.111SubmittedGL000212.1
GL000216.1Unplaced|GL000216.122SubmittedGL000216.1
GL000229.1Unplaced|GL000229.188SubmittedGL000229.1
GL000231.1Unplaced|GL000231.111SubmittedGL000231.1
GL000232.1Unplaced|GL000232.111SubmittedGL000232.1
GL000234.1Unplaced|GL000234.122SubmittedGL000234.1
GL000237.1Unplaced|GL000237.111SubmittedGL000237.1
GL000195.1Chr7|GL000195.122SubmittedGL000195.1
GL000203.1Chr17|GL000203.144SubmittedGL000203.1
GL000205.1Chr17|GL000205.111SubmittedGL000205.1

Variant Region remap statusVariant Call remap status
Sequence IDChrVariant Regions on sourcePerfectGoodPassFailMultVariant Calls on sourcePerfectGoodPassFailMult
GL000193.1Chr4|GL000193.1100002100002
GL000195.1Chr7|GL000195.1220002220002
GL000198.1Chr9|GL000198.174000107400010
GL000199.1Chr9|GL000199.1220002220002
GL000203.1Chr17|GL000203.1440004440004
GL000205.1Chr17|GL000205.1110001110001
GL000210.1Chr21|GL000210.1100011100011
GL000211.1Unplaced|GL000211.1330003330003
GL000212.1Unplaced|GL000212.1110001110001
GL000216.1Unplaced|GL000216.1220002220002
GL000219.1Unplaced|GL000219.1550005550005
GL000225.1Unplaced|GL000225.1110001110001
GL000229.1Unplaced|GL000229.1880008880008
GL000231.1Unplaced|GL000231.1110001110001
GL000232.1Unplaced|GL000232.1110001110001
GL000234.1Unplaced|GL000234.1220002220002
GL000237.1Unplaced|GL000237.1110001110001
NC_000001.10Chr18,9147,32875315,0688,9147,32875315,068
NC_000002.11Chr29,1697,58753025,2349,1697,58753025,234
NC_000003.11Chr37,8176,49343104,3707,8176,49343104,370
NC_000004.11Chr47,6716,34025604,6587,6716,34025604,658
NC_000005.9Chr57,1475,91124104,1277,1475,91124104,127
NC_000006.11Chr67,0115,72346414,1827,0115,72346414,182
NC_000007.13Chr77,1245,81580214,2107,1245,81580214,210
NC_000008.10Chr86,1294,58529214,2326,1294,58529214,232
NC_000009.11Chr94,7574,0461212,5304,7574,0461212,530
NC_000010.10Chr105,2634,44420312,8285,2634,44420312,828
NC_000011.9Chr115,7214,65334143,3915,7214,65334143,391
NC_000012.11Chr125,6724,67712113,2245,6724,67712113,224
NC_000013.10Chr133,7733,1026502,2823,7733,1026502,282
NC_000014.8Chr143,8692,86255642,4203,8692,86255642,420
NC_000015.9Chr153,1272,48611101,9503,1272,48611101,950
NC_000016.9Chr163,9413,2479202,0473,9413,2479202,047
NC_000017.10Chr173,8553,01616511,9913,8553,01616511,991
NC_000018.9Chr183,0262,49714301,7263,0262,49714301,726
NC_000019.9Chr194,3033,59934221,8784,3033,59934221,878
NC_000020.10Chr202,7442,29516301,5022,7442,29516301,502
NC_000021.8Chr211,5681,25353018831,5681,2535301883
NC_000022.10Chr221,8441,41985631,0561,8441,41985631,056
NC_000023.10ChrX5,0823,8911622453,6975,0823,8911622453,697
NC_000024.9ChrY274208500207274208500207
Variant Region remap statusVariant Call remap status
Sequence IDChrVariant Regions on sourcePerfectGoodPassFailMultVariant Calls on sourcePerfectGoodPassFailMult
GL000210.1Chr21|GL000210.1100011100011
GL000219.1Unplaced|GL000219.150000105000010
NC_000001.10Chr18,91400042,4208,91400042,420
NC_000002.11Chr29,16900022,5309,16900022,530
NC_000003.11Chr37,81700062,1047,81700062,104
NC_000004.11Chr47,67100032,2827,67100032,282
NC_000005.9Chr57,14700021,9817,14700021,981
NC_000006.11Chr67,01100032,0057,01100032,005
NC_000007.13Chr77,12400062,0287,12400062,028
NC_000008.10Chr86,12900021,8456,12900021,845
NC_000009.11Chr94,75700021,2464,75700021,246
NC_000010.10Chr105,26300021,3835,26300021,383
NC_000011.9Chr115,72100051,6045,72100051,604
NC_000012.11Chr125,67200021,5215,67200021,521
NC_000013.10Chr133,77300011,1063,77300011,106
NC_000014.8Chr143,86900041,0103,86900041,010
NC_000015.9Chr153,12700039033,1270003903
NC_000017.10Chr173,85500038123,8550003812
NC_000019.9Chr194,30300058304,3030005830
NC_000020.10Chr202,74400007452,7440000745
NC_000021.8Chr211,56800044221,5680004422
NC_000022.10Chr221,84400034981,8440003498
NC_000023.10ChrX5,082000151,8275,082000151,827
Variant Region remap statusVariant Call remap status
Sequence IDChrVariant Regions on sourcePerfectGoodPassFailMultVariant Calls on sourcePerfectGoodPassFailMult
NC_000001.11Chr113,57810,3431012331110,14513,57810,3431012331110,145
NC_000002.12Chr213,90210,6761473418310,73013,90210,6761473418310,730
NC_000003.12Chr312,5249,41275306109,13712,5249,41275306109,137
NC_000004.12Chr411,3758,844364129,33411,3758,844364129,334
NC_000005.10Chr510,9838,650379688,40010,9838,650379688,400
NC_000006.12Chr610,5487,98777222238,40510,5487,98777222238,405
NC_000007.14Chr711,2278,225200562668,61811,2278,225200562668,618
NC_000008.11Chr89,3117,249861267,3199,3117,249861267,319
NC_000009.12Chr97,4935,87212131445,3107,4935,87212131445,310
NC_000010.11Chr108,3386,14727105166,1538,3386,14727105166,153
NC_000011.10Chr119,0387,0765823266,6599,0387,0765823266,659
NC_000012.12Chr129,0456,89914154056,3539,0456,89914154056,353
NC_000013.11Chr135,8424,48415112104,7005,8424,48415112104,700
NC_000014.9Chr145,6574,38210168204,0445,6574,38210168204,044
NC_000015.10Chr154,7953,693275653,7754,7953,693275653,775
NC_000016.10Chr166,4484,950128473203,9536,4484,950128473203,953
NC_000017.11Chr175,9914,6497229164,0955,9914,6497229164,095
NC_000018.10Chr184,6223,653217483,4764,6223,653217483,476
NC_000019.10Chr196,4275,279485123,7186,4275,279485123,718
NC_000020.11Chr204,8503,28960276283,3314,8503,28960276283,331
NC_000021.9Chr212,3681,7338010261,9292,3681,7338010261,929
NC_000022.11Chr222,9552,052162201322,1152,9552,052162201322,115
NC_000023.11ChrX4,6272,1555033287,7084,6272,1555033287,708
NC_000024.10ChrY413275646450413275646450

Samplesets

Number of Samplesets: 1

Name:
Samples from multiple sites and cleared for aggregate-level data sharing
Description:
Samples from 17,795 individuals who consented to aggregate-level data sharing, from the Centers for Comparative Disease Genomics (CCDG), the McDonnell Genome Institute, the Population Architecture Using Genomics and Epidemiology (PAGE) consortium, and the Simons Genome Diversity Panel. See publication for details.
Size:
17,795 (sample data not available)
Organisms:
Homo sapiens
Sampleset Phenotype(s):
None reported

Experimental Details

Experiment IDTypeMethodAnalysisNumber of Variant Calls
1DiscoverySequencingSequence alignment299,092

Validations

No validation data were submitted for this study.

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