nstd30 (Jakobsson et al. 2008)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Mattias Jakobsson
- Description:
- Here we report the analysis of high-quality genotypes at 525,910 single-nucleotide polymorphisms (SNPs) and 396 copy-number-variable loci in a worldwide sample of 29 populations. See Variant Summary counts for nstd30 in dbVar Variant Summary.
- Publication(s):
- Jakobsson et al. 2008
Detailed Information: Download 1428 Variant Regions, Download 3436 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Remapped: GRCh37.p13 (hg19)
Submitted: NCBI36 (hg18)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 100 | 196 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 86 | 161 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 85 | 134 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 94 | 158 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 72 | 109 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 75 | 285 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 81 | 201 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 80 | 234 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 73 | 208 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 64 | 237 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 68 | 206 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 78 | 143 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 52 | 81 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 52 | 93 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 38 | 150 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 52 | 174 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 52 | 96 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 33 | 90 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 54 | 155 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 27 | 86 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 33 | 52 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 42 | 117 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 34 | 47 | Remapped | NC_000023.11 |
| NT_187515.1 | Chr1|NT_187515.1 | 2 | 11 | Remapped | NT_187515.1 |
| NT_187516.1 | Chr1|NT_187516.1 | 1 | 1 | Remapped | NT_187516.1 |
| NW_003315906.1 | Chr1|NW_003315906.1 | 1 | 1 | Remapped | NW_003315906.1 |
| NW_003315907.2 | Chr1|NW_003315907.2 | 1 | 1 | Remapped | NW_003315907.2 |
| NW_011332688.1 | Chr1|NW_011332688.1 | 1 | 1 | Remapped | NW_011332688.1 |
| NW_012132914.1 | Chr1|NW_012132914.1 | 1 | 8 | Remapped | NW_012132914.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 0 | 24 | Remapped | NT_187523.1 |
| NT_187527.1 | Chr2|NT_187527.1 | 0 | 1 | Remapped | NT_187527.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 0 | 24 | Remapped | NT_187647.1 |
| NT_187534.1 | Chr3|NT_187534.1 | 0 | 1 | Remapped | NT_187534.1 |
| NT_187539.1 | Chr3|NT_187539.1 | 1 | 1 | Remapped | NT_187539.1 |
| NW_019805489.1 | Chr3|NW_019805489.1 | 1 | 2 | Remapped | NW_019805489.1 |
| NW_019805490.1 | Chr3|NW_019805490.1 | 1 | 2 | Remapped | NW_019805490.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 1 | 2 | Remapped | NT_187679.1 |
| NT_187540.1 | Chr4|NT_187540.1 | 1 | 2 | Remapped | NT_187540.1 |
| NT_187548.1 | Chr5|NT_187548.1 | 2 | 3 | Remapped | NT_187548.1 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 1 | 1 | Remapped | NW_003571036.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 1 | 1 | Remapped | NW_016107298.1 |
| NT_167246.2 | Chr6|NT_167246.2 | 2 | 9 | Remapped | NT_167246.2 |
| NT_167247.2 | Chr6|NT_167247.2 | 2 | 10 | Remapped | NT_167247.2 |
| NT_167249.2 | Chr6|NT_167249.2 | 2 | 13 | Remapped | NT_167249.2 |
| NT_167245.2 | Chr6|NT_167245.2 | 2 | 3 | Remapped | NT_167245.2 |
| NT_167244.2 | Chr6|NT_167244.2 | 1 | 1 | Remapped | NT_167244.2 |
| NW_013171802.1 | Chr6|NW_013171802.1 | 1 | 1 | Remapped | NW_013171802.1 |
| NW_018654713.1 | Chr6|NW_018654713.1 | 2 | 2 | Remapped | NW_018654713.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 1 | 6 | Remapped | NT_187558.1 |
| NT_187561.1 | Chr7|NT_187561.1 | 0 | 2 | Remapped | NT_187561.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 2 | 60 | Remapped | NT_187562.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 1 | 6 | Remapped | NT_187653.1 |
| NW_019805493.1 | Chr7|NW_019805493.1 | 2 | 2 | Remapped | NW_019805493.1 |
| NT_187565.1 | Chr8|NT_187565.1 | 1 | 1 | Remapped | NT_187565.1 |
| NT_187571.1 | Chr8|NT_187571.1 | 1 | 8 | Remapped | NT_187571.1 |
| NT_187574.1 | Chr8|NT_187574.1 | 0 | 4 | Remapped | NT_187574.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 3 | 3 | Remapped | NT_187576.1 |
| NW_018654716.1 | Chr8|NW_018654716.1 | 0 | 7 | Remapped | NW_018654716.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 4 | 7 | Remapped | NW_018654717.1 |
| NW_009646201.1 | Chr9|NW_009646201.1 | 1 | 2 | Remapped | NW_009646201.1 |
| NT_187579.1 | Chr10|NT_187579.1 | 1 | 1 | Remapped | NT_187579.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 1 | 5 | Remapped | NW_003315934.1 |
| NT_187681.1 | Chr11|NT_187681.1 | 0 | 1 | Remapped | NT_187681.1 |
| NT_187585.1 | Chr11|NT_187585.1 | 1 | 4 | Remapped | NT_187585.1 |
| NT_187586.1 | Chr11|NT_187586.1 | 1 | 8 | Remapped | NT_187586.1 |
| NW_015148966.1 | Chr11|NW_015148966.1 | 0 | 3 | Remapped | NW_015148966.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 1 | 14 | Remapped | NT_187587.1 |
| NT_187591.1 | Chr12|NT_187591.1 | 0 | 1 | Remapped | NT_187591.1 |
| NW_003571049.1 | Chr12|NW_003571049.1 | 1 | 1 | Remapped | NW_003571049.1 |
| NW_015148967.1 | Chr12|NW_015148967.1 | 1 | 1 | Remapped | NW_015148967.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 1 | 1 | Remapped | NW_018654718.1 |
| NW_018654720.1 | Chr12|NW_018654720.1 | 1 | 1 | Remapped | NW_018654720.1 |
| NW_011332698.1 | Chr13|NW_011332698.1 | 1 | 2 | Remapped | NW_011332698.1 |
| NT_187599.1 | Chr14|NT_187599.1 | 1 | 1 | Remapped | NT_187599.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 4 | 7 | Remapped | NT_187601.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 3 | 13 | Remapped | NT_187660.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 0 | 1 | Remapped | NT_187603.1 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 3 | 13 | Remapped | NW_011332701.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 1 | 7 | Remapped | NT_187607.1 |
| NT_187608.1 | Chr16|NT_187608.1 | 1 | 2 | Remapped | NT_187608.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 2 | 24 | Remapped | NW_017852933.1 |
| NT_187662.1 | Chr17|NT_187662.1 | 1 | 1 | Remapped | NT_187662.1 |
| NT_187664.1 | Chr17|NT_187664.1 | 1 | 5 | Remapped | NT_187664.1 |
| NT_187611.1 | Chr17|NT_187611.1 | 1 | 2 | Remapped | NT_187611.1 |
| NT_187613.1 | Chr17|NT_187613.1 | 2 | 6 | Remapped | NT_187613.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 1 | 1 | Remapped | NT_187614.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 1 | 1 | Remapped | NW_003315952.3 |
| NW_016107299.1 | Chr17|NW_016107299.1 | 1 | 2 | Remapped | NW_016107299.1 |
| NW_019805503.1 | Chr18|NW_019805503.1 | 2 | 3 | Remapped | NW_019805503.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 5 | 27 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 2 | 4 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 1 | 1 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 1 | 1 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 1 | 1 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 3 | 5 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 1 | 1 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 1 | 1 | Remapped | NW_003571055.2 |
| NT_187621.1 | Chr19|NT_187621.1 | 0 | 2 | Remapped | NT_187621.1 |
| NT_187622.1 | Chr19|NT_187622.1 | 0 | 1 | Remapped | NT_187622.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 3 | 5 | Remapped | NW_003571054.1 |
| NT_187623.1 | Chr20|NT_187623.1 | 0 | 1 | Remapped | NT_187623.1 |
| NT_187624.1 | Chr20|NT_187624.1 | 1 | 1 | Remapped | NT_187624.1 |
| NT_187626.1 | Chr21|NT_187626.1 | 1 | 1 | Remapped | NT_187626.1 |
| NW_003315968.2 | Chr21|NW_003315968.2 | 1 | 2 | Remapped | NW_003315968.2 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 101 | 197 | Remapped | NC_000001.10 |
| NC_000002.11 | Chr2 | 86 | 161 | Remapped | NC_000002.11 |
| NC_000003.11 | Chr3 | 85 | 134 | Remapped | NC_000003.11 |
| NC_000004.11 | Chr4 | 94 | 158 | Remapped | NC_000004.11 |
| NC_000005.9 | Chr5 | 72 | 109 | Remapped | NC_000005.9 |
| NC_000006.11 | Chr6 | 75 | 285 | Remapped | NC_000006.11 |
| NC_000007.13 | Chr7 | 81 | 200 | Remapped | NC_000007.13 |
| NC_000008.10 | Chr8 | 80 | 234 | Remapped | NC_000008.10 |
| NC_000009.11 | Chr9 | 73 | 208 | Remapped | NC_000009.11 |
| NC_000010.10 | Chr10 | 64 | 237 | Remapped | NC_000010.10 |
| NC_000011.9 | Chr11 | 68 | 206 | Remapped | NC_000011.9 |
| NC_000012.11 | Chr12 | 77 | 142 | Remapped | NC_000012.11 |
| NC_000013.10 | Chr13 | 52 | 81 | Remapped | NC_000013.10 |
| NC_000014.8 | Chr14 | 52 | 93 | Remapped | NC_000014.8 |
| NC_000015.9 | Chr15 | 38 | 150 | Remapped | NC_000015.9 |
| NC_000016.9 | Chr16 | 52 | 174 | Remapped | NC_000016.9 |
| NC_000017.10 | Chr17 | 51 | 95 | Remapped | NC_000017.10 |
| NC_000018.9 | Chr18 | 33 | 90 | Remapped | NC_000018.9 |
| NC_000019.9 | Chr19 | 53 | 154 | Remapped | NC_000019.9 |
| NC_000020.10 | Chr20 | 27 | 86 | Remapped | NC_000020.10 |
| NC_000021.8 | Chr21 | 33 | 52 | Remapped | NC_000021.8 |
| NC_000022.10 | Chr22 | 42 | 117 | Remapped | NC_000022.10 |
| NC_000023.10 | ChrX | 34 | 47 | Remapped | NC_000023.10 |
| NW_003315907.1 | Chr1|NW_003315907.1 | 1 | 1 | Remapped | NW_003315907.1 |
| NW_003871055.3 | Chr1|NW_003871055.3 | 1 | 2 | Remapped | NW_003871055.3 |
| NW_004775426.1 | Chr3|NW_004775426.1 | 1 | 1 | Remapped | NW_004775426.1 |
| NW_004775427.1 | Chr4|NW_004775427.1 | 2 | 2 | Remapped | NW_004775427.1 |
| NW_003571036.1 | Chr5|NW_003571036.1 | 1 | 1 | Remapped | NW_003571036.1 |
| NT_167244.1 | Chr6|NT_167244.1 | 1 | 1 | Remapped | NT_167244.1 |
| NT_167245.1 | Chr6|NT_167245.1 | 2 | 3 | Remapped | NT_167245.1 |
| NT_167246.1 | Chr6|NT_167246.1 | 3 | 20 | Remapped | NT_167246.1 |
| NT_167247.1 | Chr6|NT_167247.1 | 2 | 10 | Remapped | NT_167247.1 |
| NT_167249.1 | Chr6|NT_167249.1 | 2 | 13 | Remapped | NT_167249.1 |
| NW_003571040.1 | Chr7|NW_003571040.1 | 2 | 60 | Remapped | NW_003571040.1 |
| NW_003871064.1 | Chr7|NW_003871064.1 | 1 | 1 | Remapped | NW_003871064.1 |
| NW_003315923.1 | Chr8|NW_003315923.1 | 1 | 22 | Remapped | NW_003315923.1 |
| NW_003315924.1 | Chr8|NW_003315924.1 | 0 | 6 | Remapped | NW_003315924.1 |
| NW_003571042.1 | Chr8|NW_003571042.1 | 2 | 2 | Remapped | NW_003571042.1 |
| NW_003315925.1 | Chr9|NW_003315925.1 | 1 | 2 | Remapped | NW_003315925.1 |
| NW_004070868.1 | Chr9|NW_004070868.1 | 0 | 1 | Remapped | NW_004070868.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 1 | 5 | Remapped | NW_003315934.1 |
| NW_003871068.1 | Chr10|NW_003871068.1 | 3 | 57 | Remapped | NW_003871068.1 |
| NW_004070871.1 | Chr11|NW_004070871.1 | 1 | 1 | Remapped | NW_004070871.1 |
| NW_003571048.1 | Chr12|NW_003571048.1 | 1 | 1 | Remapped | NW_003571048.1 |
| NW_004166863.1 | Chr14|NW_004166863.1 | 1 | 2 | Remapped | NW_004166863.1 |
| NW_003871085.1 | Chr16|NW_003871085.1 | 1 | 2 | Remapped | NW_003871085.1 |
| NW_004070872.2 | Chr17|NW_004070872.2 | 1 | 1 | Remapped | NW_004070872.2 |
| NW_003571053.2 | Chr19|NW_003571053.2 | 1 | 1 | Remapped | NW_003571053.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 1 | 1 | Remapped | NW_003571060.1 |
| NW_004166865.1 | Chr19|NW_004166865.1 | 2 | 22 | Remapped | NW_004166865.1 |
| NW_003571063.2 | Chr20|NW_003571063.2 | 0 | 3 | Remapped | NW_003571063.2 |
| NW_003315968.1 | Chr21|NW_003315968.1 | 1 | 2 | Remapped | NW_003315968.1 |
| NW_003871098.1 | ChrX|NW_003871098.1 | 1 | 1 | Remapped | NW_003871098.1 |
| NW_003871103.3 | ChrX|NW_003871103.3 | 1 | 1 | Remapped | NW_003871103.3 |
| NW_004070880.2 | ChrX|NW_004070880.2 | 2 | 3 | Remapped | NW_004070880.2 |
| NW_004070888.1 | ChrX|NW_004070888.1 | 6 | 7 | Remapped | NW_004070888.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.9 | Chr1 | 101 | 197 | Submitted | NC_000001.9 |
| NC_000002.10 | Chr2 | 86 | 161 | Submitted | NC_000002.10 |
| NC_000003.10 | Chr3 | 85 | 134 | Submitted | NC_000003.10 |
| NC_000004.10 | Chr4 | 94 | 158 | Submitted | NC_000004.10 |
| NC_000005.8 | Chr5 | 72 | 109 | Submitted | NC_000005.8 |
| NC_000006.10 | Chr6 | 75 | 285 | Submitted | NC_000006.10 |
| NC_000007.12 | Chr7 | 81 | 201 | Submitted | NC_000007.12 |
| NC_000008.9 | Chr8 | 80 | 234 | Submitted | NC_000008.9 |
| NC_000009.10 | Chr9 | 73 | 208 | Submitted | NC_000009.10 |
| NC_000010.9 | Chr10 | 64 | 237 | Submitted | NC_000010.9 |
| NC_000011.8 | Chr11 | 68 | 206 | Submitted | NC_000011.8 |
| NC_000012.10 | Chr12 | 78 | 143 | Submitted | NC_000012.10 |
| NC_000013.9 | Chr13 | 52 | 81 | Submitted | NC_000013.9 |
| NC_000014.7 | Chr14 | 52 | 93 | Submitted | NC_000014.7 |
| NC_000015.8 | Chr15 | 38 | 150 | Submitted | NC_000015.8 |
| NC_000016.8 | Chr16 | 52 | 174 | Submitted | NC_000016.8 |
| NC_000017.9 | Chr17 | 52 | 96 | Submitted | NC_000017.9 |
| NC_000018.8 | Chr18 | 33 | 90 | Submitted | NC_000018.8 |
| NC_000019.8 | Chr19 | 56 | 177 | Submitted | NC_000019.8 |
| NC_000020.9 | Chr20 | 27 | 86 | Submitted | NC_000020.9 |
| NC_000021.7 | Chr21 | 33 | 52 | Submitted | NC_000021.7 |
| NC_000022.9 | Chr22 | 42 | 117 | Submitted | NC_000022.9 |
| NC_000023.9 | ChrX | 34 | 47 | Submitted | NC_000023.9 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 101 | 99 | 0 | 0 | 0 | 2 | 197 | 193 | 0 | 1 | 0 | 3 |
| NC_000002.10 | Chr2 | 86 | 85 | 1 | 0 | 0 | 0 | 161 | 156 | 5 | 0 | 0 | 0 |
| NC_000003.10 | Chr3 | 85 | 83 | 1 | 0 | 0 | 1 | 134 | 132 | 1 | 0 | 0 | 1 |
| NC_000004.10 | Chr4 | 94 | 91 | 1 | 0 | 0 | 2 | 158 | 151 | 5 | 0 | 0 | 2 |
| NC_000005.8 | Chr5 | 72 | 70 | 1 | 0 | 0 | 1 | 109 | 107 | 1 | 0 | 0 | 1 |
| NC_000006.10 | Chr6 | 75 | 71 | 0 | 0 | 0 | 4 | 285 | 263 | 0 | 0 | 0 | 22 |
| NC_000007.12 | Chr7 | 81 | 77 | 1 | 0 | 0 | 3 | 201 | 139 | 2 | 0 | 0 | 60 |
| NC_000008.9 | Chr8 | 80 | 71 | 4 | 2 | 0 | 3 | 234 | 192 | 8 | 4 | 0 | 30 |
| NC_000009.10 | Chr9 | 73 | 71 | 0 | 1 | 0 | 1 | 208 | 204 | 0 | 1 | 0 | 3 |
| NC_000010.9 | Chr10 | 64 | 60 | 0 | 0 | 0 | 4 | 237 | 175 | 0 | 0 | 0 | 62 |
| NC_000011.8 | Chr11 | 68 | 65 | 2 | 0 | 0 | 1 | 206 | 202 | 1 | 2 | 0 | 1 |
| NC_000012.10 | Chr12 | 78 | 77 | 0 | 1 | 0 | 0 | 143 | 142 | 0 | 1 | 0 | 0 |
| NC_000013.9 | Chr13 | 52 | 51 | 0 | 1 | 0 | 0 | 81 | 80 | 0 | 1 | 0 | 0 |
| NC_000014.7 | Chr14 | 52 | 50 | 1 | 0 | 0 | 1 | 93 | 84 | 2 | 5 | 0 | 2 |
| NC_000015.8 | Chr15 | 38 | 36 | 2 | 0 | 0 | 0 | 150 | 147 | 3 | 0 | 0 | 0 |
| NC_000016.8 | Chr16 | 52 | 50 | 0 | 1 | 0 | 1 | 174 | 171 | 0 | 1 | 0 | 2 |
| NC_000017.9 | Chr17 | 52 | 48 | 3 | 1 | 0 | 0 | 96 | 83 | 6 | 7 | 0 | 0 |
| NC_000018.8 | Chr18 | 33 | 33 | 0 | 0 | 0 | 0 | 90 | 90 | 0 | 0 | 0 | 0 |
| NC_000019.8 | Chr19 | 56 | 52 | 2 | 1 | 0 | 1 | 177 | 153 | 22 | 1 | 0 | 1 |
| NC_000020.9 | Chr20 | 27 | 26 | 1 | 0 | 0 | 0 | 86 | 79 | 2 | 2 | 0 | 3 |
| NC_000021.7 | Chr21 | 33 | 32 | 0 | 0 | 0 | 1 | 52 | 50 | 0 | 0 | 0 | 2 |
| NC_000022.9 | Chr22 | 42 | 41 | 1 | 0 | 0 | 0 | 117 | 116 | 1 | 0 | 0 | 0 |
| NC_000023.9 | ChrX | 34 | 22 | 0 | 2 | 0 | 10 | 47 | 30 | 0 | 5 | 0 | 12 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.9 | Chr1 | 101 | 89 | 4 | 0 | 1 | 7 | 197 | 167 | 6 | 0 | 1 | 23 |
| NC_000002.10 | Chr2 | 86 | 81 | 4 | 1 | 0 | 0 | 161 | 126 | 5 | 5 | 0 | 25 |
| NC_000003.10 | Chr3 | 85 | 78 | 4 | 0 | 0 | 3 | 134 | 118 | 10 | 0 | 0 | 6 |
| NC_000004.10 | Chr4 | 94 | 89 | 3 | 0 | 0 | 2 | 158 | 146 | 8 | 0 | 0 | 4 |
| NC_000005.8 | Chr5 | 72 | 65 | 3 | 0 | 0 | 4 | 109 | 101 | 3 | 0 | 0 | 5 |
| NC_000006.10 | Chr6 | 75 | 64 | 2 | 2 | 0 | 7 | 285 | 256 | 2 | 2 | 0 | 25 |
| NC_000007.12 | Chr7 | 81 | 65 | 11 | 0 | 0 | 5 | 201 | 117 | 14 | 0 | 0 | 70 |
| NC_000008.9 | Chr8 | 80 | 65 | 4 | 2 | 0 | 9 | 234 | 166 | 16 | 22 | 0 | 30 |
| NC_000009.10 | Chr9 | 73 | 72 | 0 | 0 | 0 | 1 | 208 | 206 | 0 | 0 | 0 | 2 |
| NC_000010.9 | Chr10 | 64 | 61 | 0 | 1 | 0 | 2 | 237 | 228 | 0 | 3 | 0 | 6 |
| NC_000011.8 | Chr11 | 68 | 59 | 7 | 0 | 0 | 2 | 206 | 177 | 11 | 3 | 0 | 15 |
| NC_000012.10 | Chr12 | 78 | 71 | 2 | 0 | 0 | 5 | 143 | 122 | 2 | 0 | 0 | 19 |
| NC_000013.9 | Chr13 | 52 | 50 | 0 | 1 | 0 | 1 | 81 | 78 | 0 | 1 | 0 | 2 |
| NC_000014.7 | Chr14 | 52 | 44 | 2 | 1 | 0 | 5 | 93 | 81 | 3 | 1 | 0 | 8 |
| NC_000015.8 | Chr15 | 38 | 32 | 3 | 0 | 0 | 3 | 150 | 129 | 7 | 0 | 0 | 14 |
| NC_000016.8 | Chr16 | 52 | 46 | 2 | 0 | 0 | 4 | 174 | 138 | 3 | 0 | 0 | 33 |
| NC_000017.9 | Chr17 | 52 | 43 | 1 | 2 | 0 | 6 | 96 | 68 | 9 | 7 | 0 | 12 |
| NC_000018.8 | Chr18 | 33 | 30 | 1 | 0 | 0 | 2 | 90 | 86 | 1 | 0 | 0 | 3 |
| NC_000019.8 | Chr19 | 56 | 49 | 4 | 0 | 0 | 3 | 177 | 163 | 6 | 0 | 0 | 8 |
| NC_000020.9 | Chr20 | 27 | 22 | 4 | 0 | 0 | 1 | 86 | 76 | 8 | 0 | 0 | 2 |
| NC_000021.7 | Chr21 | 33 | 29 | 2 | 0 | 0 | 2 | 52 | 47 | 2 | 0 | 0 | 3 |
| NC_000022.9 | Chr22 | 42 | 38 | 4 | 0 | 0 | 0 | 117 | 110 | 7 | 0 | 0 | 0 |
| NC_000023.9 | ChrX | 34 | 21 | 13 | 0 | 0 | 0 | 47 | 25 | 22 | 0 | 0 | 0 |
Samplesets
Number of Samplesets: 1
- Description:
- We selected a geographically broad collection of HGDP-CEPH samples from 29 populations.
- Size:
- 443
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
| Sample ID | Cell Type | Subject ID | Sex | Ethnicity | Subject Phenotype |
|---|---|---|---|---|---|
| HGDP00074 | B-lymphocytes | HGDP00074 | Male | Balochi | Not reported |
| HGDP00450 | B-lymphocytes | HGDP00450 | Male | Mbuti Pygmies | Not reported |
| HGDP00064 | B-lymphocytes | HGDP00064 | Male | Balochi | Not reported |
| HGDP00547 | B-lymphocytes | HGDP00547 | Male | Papuan | Not reported |
| HGDP00466 | B-lymphocytes | HGDP00466 | Male | Biaka Pygmies | Not reported |
| HGDP00566 | B-lymphocytes | HGDP00566 | Female | Druze | Not reported |
| HGDP00455 | B-lymphocytes | HGDP00455 | Male | Biaka Pygmies | Not reported |
| HGDP00449 | B-lymphocytes | HGDP00449 | Male | Mbuti Pygmies | Not reported |
| HGDP00556 | B-lymphocytes | HGDP00556 | Male | Papuan | Not reported |
| HGDP00288 | B-lymphocytes | HGDP00288 | Male | Kalash | Not reported |
| HGDP00330 | B-lymphocytes | HGDP00330 | Male | Kalash | Not reported |
| HGDP00578 | B-lymphocytes | HGDP00578 | Female | Druze | Not reported |
| HGDP00464 | B-lymphocytes | HGDP00464 | Male | Biaka Pygmies | Not reported |
| HGDP00448 | B-lymphocytes | HGDP00448 | Male | Biaka Pygmies | Not reported |
| HGDP00326 | B-lymphocytes | HGDP00326 | Male | Kalash | Not reported |
| HGDP00054 | B-lymphocytes | HGDP00054 | Male | Balochi | Not reported |
| HGDP00579 | B-lymphocytes | HGDP00579 | Female | Druze | Not reported |
| HGDP00052 | B-lymphocytes | HGDP00052 | Male | Balochi | Not reported |
| HGDP00474 | B-lymphocytes | HGDP00474 | Male | Mbuti Pygmies | Not reported |
| HGDP00580 | B-lymphocytes | HGDP00580 | Male | Druze | Not reported |
| HGDP00346 | B-lymphocytes | HGDP00346 | Male | Burusho | Not reported |
| HGDP00458 | B-lymphocytes | HGDP00458 | Male | Biaka Pygmies | Not reported |
| HGDP00451 | B-lymphocytes | HGDP00451 | Male | Biaka Pygmies | Not reported |
| HGDP00569 | B-lymphocytes | HGDP00569 | Female | Druze | Not reported |
| HGDP00471 | B-lymphocytes | HGDP00471 | Female | Mbuti Pygmies | Not reported |
| HGDP00382 | B-lymphocytes | HGDP00382 | Male | Burusho | Not reported |
| HGDP00323 | B-lymphocytes | HGDP00323 | Female | Kalash | Not reported |
| HGDP00475 | B-lymphocytes | HGDP00475 | Male | Biaka Pygmies | Not reported |
| HGDP00542 | B-lymphocytes | HGDP00542 | Male | Papuan | Not reported |
| HGDP00302 | B-lymphocytes | HGDP00302 | Male | Kalash | Not reported |
| HGDP00561 | B-lymphocytes | HGDP00561 | Female | Druze | Not reported |
| HGDP00554 | B-lymphocytes | HGDP00554 | Female | Papuan | Not reported |
| HGDP00557 | B-lymphocytes | HGDP00557 | Female | Druze | Not reported |
| HGDP00473 | B-lymphocytes | HGDP00473 | Male | Biaka Pygmies | Not reported |
| HGDP00469 | B-lymphocytes | HGDP00469 | Male | Biaka Pygmies | Not reported |
| HGDP00581 | B-lymphocytes | HGDP00581 | Female | Druze | Not reported |
| HGDP00551 | B-lymphocytes | HGDP00551 | Male | Papuan | Not reported |
| HGDP00460 | B-lymphocytes | HGDP00460 | Male | Biaka Pygmies | Not reported |
| HGDP00576 | B-lymphocytes | HGDP00576 | Male | Druze | Not reported |
| HGDP00472 | B-lymphocytes | HGDP00472 | Male | Biaka Pygmies | Not reported |
| HGDP00582 | B-lymphocytes | HGDP00582 | Female | Druze | Not reported |
| HGDP00477 | B-lymphocytes | HGDP00477 | Male | Biaka Pygmies | Not reported |
| HGDP00465 | B-lymphocytes | HGDP00465 | Male | Biaka Pygmies | Not reported |
| HGDP00070 | B-lymphocytes | HGDP00070 | Male | Balochi | Not reported |
| HGDP00356 | B-lymphocytes | HGDP00356 | Female | Burusho | Not reported |
| HGDP00456 | B-lymphocytes | HGDP00456 | Male | Mbuti Pygmies | Not reported |
| HGDP00550 | B-lymphocytes | HGDP00550 | Female | Papuan | Not reported |
| HGDP00461 | B-lymphocytes | HGDP00461 | Male | Biaka Pygmies | Not reported |
| HGDP00544 | B-lymphocytes | HGDP00544 | Female | Papuan | Not reported |
| HGDP00553 | B-lymphocytes | HGDP00553 | Male | Papuan | Not reported |
| HGDP00577 | B-lymphocytes | HGDP00577 | Female | Druze | Not reported |
| HGDP00559 | B-lymphocytes | HGDP00559 | Female | Druze | Not reported |
| HGDP00560 | B-lymphocytes | HGDP00560 | Female | Druze | Not reported |
| HGDP00558 | B-lymphocytes | HGDP00558 | Female | Druze | Not reported |
| HGDP00333 | B-lymphocytes | HGDP00333 | Male | Kalash | Not reported |
| HGDP00562 | B-lymphocytes | HGDP00562 | Male | Druze | Not reported |
| HGDP00376 | B-lymphocytes | HGDP00376 | Male | Burusho | Not reported |
| HGDP00457 | B-lymphocytes | HGDP00457 | Male | Biaka Pygmies | Not reported |
| HGDP00491 | B-lymphocytes | HGDP00491 | Male | NAN Melanesian | Not reported |
| HGDP00575 | B-lymphocytes | HGDP00575 | Female | Druze | Not reported |
| HGDP00574 | B-lymphocytes | HGDP00574 | Female | Druze | Not reported |
| HGDP00570 | B-lymphocytes | HGDP00570 | Female | Druze | Not reported |
| HGDP00076 | B-lymphocytes | HGDP00076 | Male | Balochi | Not reported |
| HGDP00573 | B-lymphocytes | HGDP00573 | Female | Druze | Not reported |
| HGDP00298 | B-lymphocytes | HGDP00298 | Female | Kalash | Not reported |
| HGDP00568 | B-lymphocytes | HGDP00568 | Female | Druze | Not reported |
| HGDP00478 | B-lymphocytes | HGDP00478 | Male | Mbuti Pygmies | Not reported |
| HGDP00315 | B-lymphocytes | HGDP00315 | Male | Kalash | Not reported |
| HGDP00058 | B-lymphocytes | HGDP00058 | Male | Balochi | Not reported |
| HGDP00388 | B-lymphocytes | HGDP00388 | Male | Burusho | Not reported |
| HGDP00572 | B-lymphocytes | HGDP00572 | Female | Druze | Not reported |
| HGDP00479 | B-lymphocytes | HGDP00479 | Male | Biaka Pygmies | Not reported |
| HGDP00066 | B-lymphocytes | HGDP00066 | Male | Balochi | Not reported |
| HGDP00468 | B-lymphocytes | HGDP00468 | Male | Mbuti Pygmies | Not reported |
| HGDP00546 | B-lymphocytes | HGDP00546 | Male | Papuan | Not reported |
| HGDP00057 | B-lymphocytes | HGDP00057 | Male | Balochi | Not reported |
| HGDP00321 | B-lymphocytes | HGDP00321 | Male | Kalash | Not reported |
| HGDP00548 | B-lymphocytes | HGDP00548 | Male | Papuan | Not reported |
| HGDP00549 | B-lymphocytes | HGDP00549 | Male | Papuan | Not reported |
| HGDP00078 | B-lymphocytes | HGDP00078 | Male | Balochi | Not reported |
| HGDP00452 | B-lymphocytes | HGDP00452 | Male | Biaka Pygmies | Not reported |
| HGDP00564 | B-lymphocytes | HGDP00564 | Female | Druze | Not reported |
| HGDP00313 | B-lymphocytes | HGDP00313 | Male | Kalash | Not reported |
| HGDP00056 | B-lymphocytes | HGDP00056 | Male | Balochi | Not reported |
| HGDP00062 | B-lymphocytes | HGDP00062 | Male | Balochi | Not reported |
| HGDP00470 | B-lymphocytes | HGDP00470 | Male | Biaka Pygmies | Not reported |
| HGDP00281 | B-lymphocytes | HGDP00281 | Male | Kalash | Not reported |
| HGDP00463 | B-lymphocytes | HGDP00463 | Male | Mbuti Pygmies | Not reported |
| HGDP00328 | B-lymphocytes | HGDP00328 | Male | Kalash | Not reported |
| HGDP00459 | B-lymphocytes | HGDP00459 | Male | Biaka Pygmies | Not reported |
| HGDP00060 | B-lymphocytes | HGDP00060 | Male | Balochi | Not reported |
| HGDP00453 | B-lymphocytes | HGDP00453 | Male | Biaka Pygmies | Not reported |
| HGDP00454 | B-lymphocytes | HGDP00454 | Male | Biaka Pygmies | Not reported |
| HGDP00571 | B-lymphocytes | HGDP00571 | Female | Druze | Not reported |
| HGDP00351 | B-lymphocytes | HGDP00351 | Male | Burusho | Not reported |
| HGDP00467 | B-lymphocytes | HGDP00467 | Male | Mbuti Pygmies | Not reported |
| HGDP00290 | B-lymphocytes | HGDP00290 | Male | Kalash | Not reported |
| HGDP00072 | B-lymphocytes | HGDP00072 | Male | Balochi | Not reported |
| HGDP00462 | B-lymphocytes | HGDP00462 | Male | Mbuti Pygmies | Not reported |
| HGDP00543 | B-lymphocytes | HGDP00543 | Male | Papuan | Not reported |
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Data | Number of Variant Calls |
|---|---|---|---|---|---|---|
| 1 | Discovery | SNP array | SNP genotyping analysis | Illumina HumanHap550 Genotyping BeadChip v1, Illumina HumanHap550 Genotyping BeadChip v3 | GEO | 3,436 |