nstd99 (Thareja et al. 2015)
- Organism:
- Human
- Study Type:
- Control Set
- Submitter:
- Prashantha Hebbar
- Description:
- Comprehensive analysis of a personal genome of Persian ancestry from Kuwait. See Variant Summary counts for nstd99 in dbVar Variant Summary.
- Project:
- PRJNA245931
- Publication(s):
- Thareja et al. 2015
Detailed Information: Download 11116 Variant Regions, Download 11116 Variant Calls, Download Both, FTP
Variant Summary
Assembly used for analysis:
Remapped: GRCh38.p12 (hg38)
Submitted: GRCh37 (hg19)
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.11 | Chr1 | 896 | 896 | Remapped | NC_000001.11 |
| NC_000002.12 | Chr2 | 784 | 784 | Remapped | NC_000002.12 |
| NC_000003.12 | Chr3 | 524 | 524 | Remapped | NC_000003.12 |
| NC_000004.12 | Chr4 | 727 | 727 | Remapped | NC_000004.12 |
| NC_000005.10 | Chr5 | 607 | 607 | Remapped | NC_000005.10 |
| NC_000006.12 | Chr6 | 548 | 548 | Remapped | NC_000006.12 |
| NC_000007.14 | Chr7 | 730 | 730 | Remapped | NC_000007.14 |
| NC_000008.11 | Chr8 | 558 | 558 | Remapped | NC_000008.11 |
| NC_000009.12 | Chr9 | 614 | 614 | Remapped | NC_000009.12 |
| NC_000010.11 | Chr10 | 558 | 558 | Remapped | NC_000010.11 |
| NC_000011.10 | Chr11 | 501 | 501 | Remapped | NC_000011.10 |
| NC_000012.12 | Chr12 | 484 | 484 | Remapped | NC_000012.12 |
| NC_000013.11 | Chr13 | 289 | 289 | Remapped | NC_000013.11 |
| NC_000014.9 | Chr14 | 305 | 305 | Remapped | NC_000014.9 |
| NC_000015.10 | Chr15 | 381 | 381 | Remapped | NC_000015.10 |
| NC_000016.10 | Chr16 | 451 | 451 | Remapped | NC_000016.10 |
| NC_000017.11 | Chr17 | 381 | 381 | Remapped | NC_000017.11 |
| NC_000018.10 | Chr18 | 305 | 305 | Remapped | NC_000018.10 |
| NC_000019.10 | Chr19 | 420 | 420 | Remapped | NC_000019.10 |
| NC_000020.11 | Chr20 | 292 | 292 | Remapped | NC_000020.11 |
| NC_000021.9 | Chr21 | 323 | 323 | Remapped | NC_000021.9 |
| NC_000022.11 | Chr22 | 231 | 231 | Remapped | NC_000022.11 |
| NC_000023.11 | ChrX | 384 | 384 | Remapped | NC_000023.11 |
| NC_000024.10 | ChrY | 155 | 155 | Remapped | NC_000024.10 |
| NT_187513.1 | Unplaced|NT_187513.1 | 4 | 4 | Remapped | NT_187513.1 |
| NT_187361.1 | Chr1|NT_187361.1 | 8 | 8 | Remapped | NT_187361.1 |
| NT_187514.1 | Chr1|NT_187514.1 | 1 | 1 | Remapped | NT_187514.1 |
| NT_187515.1 | Chr1|NT_187515.1 | 4 | 4 | Remapped | NT_187515.1 |
| NT_187516.1 | Chr1|NT_187516.1 | 2 | 2 | Remapped | NT_187516.1 |
| NT_187518.1 | Chr1|NT_187518.1 | 1 | 1 | Remapped | NT_187518.1 |
| NT_187519.1 | Chr1|NT_187519.1 | 2 | 2 | Remapped | NT_187519.1 |
| NT_187520.1 | Chr1|NT_187520.1 | 4 | 4 | Remapped | NT_187520.1 |
| NT_187646.1 | Chr1|NT_187646.1 | 1 | 1 | Remapped | NT_187646.1 |
| NW_009646194.1 | Chr1|NW_009646194.1 | 2 | 2 | Remapped | NW_009646194.1 |
| NW_011332687.1 | Chr1|NW_011332687.1 | 2 | 2 | Remapped | NW_011332687.1 |
| NW_011332688.1 | Chr1|NW_011332688.1 | 6 | 6 | Remapped | NW_011332688.1 |
| NW_012132914.1 | Chr1|NW_012132914.1 | 5 | 5 | Remapped | NW_012132914.1 |
| NW_014040926.1 | Chr1|NW_014040926.1 | 1 | 1 | Remapped | NW_014040926.1 |
| NW_015495298.1 | Chr1|NW_015495298.1 | 1 | 1 | Remapped | NW_015495298.1 |
| NW_018654707.1 | Chr1|NW_018654707.1 | 2 | 2 | Remapped | NW_018654707.1 |
| NW_018654708.1 | Chr1|NW_018654708.1 | 1 | 1 | Remapped | NW_018654708.1 |
| NT_187522.1 | Chr2|NT_187522.1 | 1 | 1 | Remapped | NT_187522.1 |
| NT_187523.1 | Chr2|NT_187523.1 | 1 | 1 | Remapped | NT_187523.1 |
| NT_187524.1 | Chr2|NT_187524.1 | 2 | 2 | Remapped | NT_187524.1 |
| NT_187525.1 | Chr2|NT_187525.1 | 2 | 2 | Remapped | NT_187525.1 |
| NT_187526.1 | Chr2|NT_187526.1 | 1 | 1 | Remapped | NT_187526.1 |
| NT_187527.1 | Chr2|NT_187527.1 | 3 | 3 | Remapped | NT_187527.1 |
| NT_187528.1 | Chr2|NT_187528.1 | 4 | 4 | Remapped | NT_187528.1 |
| NT_187529.1 | Chr2|NT_187529.1 | 4 | 4 | Remapped | NT_187529.1 |
| NT_187647.1 | Chr2|NT_187647.1 | 1 | 1 | Remapped | NT_187647.1 |
| NT_187648.1 | Chr2|NT_187648.1 | 4 | 4 | Remapped | NT_187648.1 |
| NW_003315908.1 | Chr2|NW_003315908.1 | 1 | 1 | Remapped | NW_003315908.1 |
| NW_011332689.1 | Chr2|NW_011332689.1 | 2 | 2 | Remapped | NW_011332689.1 |
| NW_011332690.1 | Chr2|NW_011332690.1 | 1 | 1 | Remapped | NW_011332690.1 |
| NW_012132915.1 | Chr2|NW_012132915.1 | 1 | 1 | Remapped | NW_012132915.1 |
| NW_015495299.1 | Chr2|NW_015495299.1 | 1 | 1 | Remapped | NW_015495299.1 |
| NW_018654710.1 | Chr2|NW_018654710.1 | 1 | 1 | Remapped | NW_018654710.1 |
| NT_187678.1 | Chr3|NT_187678.1 | 9 | 9 | Remapped | NT_187678.1 |
| NT_187688.1 | Chr3|NT_187688.1 | 9 | 9 | Remapped | NT_187688.1 |
| NT_187689.1 | Chr3|NT_187689.1 | 11 | 11 | Remapped | NT_187689.1 |
| NT_187690.1 | Chr3|NT_187690.1 | 9 | 9 | Remapped | NT_187690.1 |
| NT_187691.1 | Chr3|NT_187691.1 | 9 | 9 | Remapped | NT_187691.1 |
| NT_187532.1 | Chr3|NT_187532.1 | 10 | 10 | Remapped | NT_187532.1 |
| NT_187537.1 | Chr3|NT_187537.1 | 2 | 2 | Remapped | NT_187537.1 |
| NT_187539.1 | Chr3|NT_187539.1 | 2 | 2 | Remapped | NT_187539.1 |
| NT_187649.1 | Chr3|NT_187649.1 | 9 | 9 | Remapped | NT_187649.1 |
| NW_003871060.2 | Chr3|NW_003871060.2 | 1 | 1 | Remapped | NW_003871060.2 |
| NW_009646197.1 | Chr3|NW_009646197.1 | 1 | 1 | Remapped | NW_009646197.1 |
| NW_009646198.1 | Chr3|NW_009646198.1 | 1 | 1 | Remapped | NW_009646198.1 |
| NW_012132916.1 | Chr3|NW_012132916.1 | 1 | 1 | Remapped | NW_012132916.1 |
| NW_017363813.1 | Chr3|NW_017363813.1 | 1 | 1 | Remapped | NW_017363813.1 |
| NW_018654711.1 | Chr3|NW_018654711.1 | 1 | 1 | Remapped | NW_018654711.1 |
| NW_019805488.1 | Chr3|NW_019805488.1 | 1 | 1 | Remapped | NW_019805488.1 |
| NW_019805492.1 | Chr3|NW_019805492.1 | 1 | 1 | Remapped | NW_019805492.1 |
| NT_187679.1 | Chr4|NT_187679.1 | 13 | 13 | Remapped | NT_187679.1 |
| NT_113793.3 | Chr4|NT_113793.3 | 8 | 8 | Remapped | NT_113793.3 |
| NT_187543.1 | Chr4|NT_187543.1 | 11 | 11 | Remapped | NT_187543.1 |
| NT_187544.1 | Chr4|NT_187544.1 | 2 | 2 | Remapped | NT_187544.1 |
| NT_187545.1 | Chr4|NT_187545.1 | 4 | 4 | Remapped | NT_187545.1 |
| NT_187650.1 | Chr4|NT_187650.1 | 13 | 13 | Remapped | NT_187650.1 |
| NW_013171799.1 | Chr4|NW_013171799.1 | 1 | 1 | Remapped | NW_013171799.1 |
| NW_013171800.1 | Chr4|NW_013171800.1 | 1 | 1 | Remapped | NW_013171800.1 |
| NW_017363814.1 | Chr4|NW_017363814.1 | 1 | 1 | Remapped | NW_017363814.1 |
| NT_187546.1 | Chr5|NT_187546.1 | 2 | 2 | Remapped | NT_187546.1 |
| NT_187547.1 | Chr5|NT_187547.1 | 6 | 6 | Remapped | NT_187547.1 |
| NT_187548.1 | Chr5|NT_187548.1 | 6 | 6 | Remapped | NT_187548.1 |
| NT_187550.1 | Chr5|NT_187550.1 | 3 | 3 | Remapped | NT_187550.1 |
| NT_187651.1 | Chr5|NT_187651.1 | 9 | 9 | Remapped | NT_187651.1 |
| NT_187652.1 | Chr5|NT_187652.1 | 2 | 2 | Remapped | NT_187652.1 |
| NW_003315917.2 | Chr5|NW_003315917.2 | 12 | 12 | Remapped | NW_003315917.2 |
| NW_003315918.1 | Chr5|NW_003315918.1 | 1 | 1 | Remapped | NW_003315918.1 |
| NW_009646199.1 | Chr5|NW_009646199.1 | 3 | 3 | Remapped | NW_009646199.1 |
| NW_016107297.1 | Chr5|NW_016107297.1 | 3 | 3 | Remapped | NW_016107297.1 |
| NW_016107298.1 | Chr5|NW_016107298.1 | 7 | 7 | Remapped | NW_016107298.1 |
| NT_187552.1 | Chr6|NT_187552.1 | 5 | 5 | Remapped | NT_187552.1 |
| NT_187553.1 | Chr6|NT_187553.1 | 4 | 4 | Remapped | NT_187553.1 |
| NT_187555.1 | Chr6|NT_187555.1 | 1 | 1 | Remapped | NT_187555.1 |
| NW_003315921.1 | Chr6|NW_003315921.1 | 1 | 1 | Remapped | NW_003315921.1 |
| NW_004166862.2 | Chr6|NW_004166862.2 | 2 | 2 | Remapped | NW_004166862.2 |
| NW_012132918.1 | Chr6|NW_012132918.1 | 1 | 1 | Remapped | NW_012132918.1 |
| NW_013171802.1 | Chr6|NW_013171802.1 | 1 | 1 | Remapped | NW_013171802.1 |
| NT_187558.1 | Chr7|NT_187558.1 | 4 | 4 | Remapped | NT_187558.1 |
| NT_187560.1 | Chr7|NT_187560.1 | 8 | 8 | Remapped | NT_187560.1 |
| NT_187561.1 | Chr7|NT_187561.1 | 2 | 2 | Remapped | NT_187561.1 |
| NT_187562.1 | Chr7|NT_187562.1 | 5 | 5 | Remapped | NT_187562.1 |
| NT_187563.1 | Chr7|NT_187563.1 | 1 | 1 | Remapped | NT_187563.1 |
| NT_187653.1 | Chr7|NT_187653.1 | 5 | 5 | Remapped | NT_187653.1 |
| NW_012132919.1 | Chr7|NW_012132919.1 | 1 | 1 | Remapped | NW_012132919.1 |
| NW_017852929.1 | Chr7|NW_017852929.1 | 2 | 2 | Remapped | NW_017852929.1 |
| NW_018654714.1 | Chr7|NW_018654714.1 | 4 | 4 | Remapped | NW_018654714.1 |
| NW_018654715.1 | Chr7|NW_018654715.1 | 3 | 3 | Remapped | NW_018654715.1 |
| NT_187680.1 | Chr8|NT_187680.1 | 2 | 2 | Remapped | NT_187680.1 |
| NT_187565.1 | Chr8|NT_187565.1 | 11 | 11 | Remapped | NT_187565.1 |
| NT_187566.1 | Chr8|NT_187566.1 | 2 | 2 | Remapped | NT_187566.1 |
| NT_187567.1 | Chr8|NT_187567.1 | 1 | 1 | Remapped | NT_187567.1 |
| NT_187568.1 | Chr8|NT_187568.1 | 9 | 9 | Remapped | NT_187568.1 |
| NT_187569.1 | Chr8|NT_187569.1 | 2 | 2 | Remapped | NT_187569.1 |
| NT_187570.1 | Chr8|NT_187570.1 | 13 | 13 | Remapped | NT_187570.1 |
| NT_187571.1 | Chr8|NT_187571.1 | 2 | 2 | Remapped | NT_187571.1 |
| NT_187572.1 | Chr8|NT_187572.1 | 1 | 1 | Remapped | NT_187572.1 |
| NT_187573.1 | Chr8|NT_187573.1 | 1 | 1 | Remapped | NT_187573.1 |
| NT_187574.1 | Chr8|NT_187574.1 | 2 | 2 | Remapped | NT_187574.1 |
| NT_187576.1 | Chr8|NT_187576.1 | 14 | 14 | Remapped | NT_187576.1 |
| NT_187577.1 | Chr8|NT_187577.1 | 1 | 1 | Remapped | NT_187577.1 |
| NT_187654.1 | Chr8|NT_187654.1 | 7 | 7 | Remapped | NT_187654.1 |
| NT_187655.1 | Chr8|NT_187655.1 | 2 | 2 | Remapped | NT_187655.1 |
| NW_017852932.1 | Chr8|NW_017852932.1 | 2 | 2 | Remapped | NW_017852932.1 |
| NW_018654716.1 | Chr8|NW_018654716.1 | 2 | 2 | Remapped | NW_018654716.1 |
| NW_018654717.1 | Chr8|NW_018654717.1 | 70 | 70 | Remapped | NW_018654717.1 |
| NW_009646201.1 | Chr9|NW_009646201.1 | 2 | 2 | Remapped | NW_009646201.1 |
| NT_187579.1 | Chr10|NT_187579.1 | 14 | 14 | Remapped | NT_187579.1 |
| NW_003315934.1 | Chr10|NW_003315934.1 | 1 | 1 | Remapped | NW_003315934.1 |
| NW_013171807.1 | Chr10|NW_013171807.1 | 1 | 1 | Remapped | NW_013171807.1 |
| NT_187681.1 | Chr11|NT_187681.1 | 9 | 9 | Remapped | NT_187681.1 |
| NT_187656.1 | Chr11|NT_187656.1 | 3 | 3 | Remapped | NT_187656.1 |
| NT_187657.1 | Chr11|NT_187657.1 | 2 | 2 | Remapped | NT_187657.1 |
| NT_187581.1 | Chr11|NT_187581.1 | 1 | 1 | Remapped | NT_187581.1 |
| NT_187583.1 | Chr11|NT_187583.1 | 1 | 1 | Remapped | NT_187583.1 |
| NT_187584.1 | Chr11|NT_187584.1 | 2 | 2 | Remapped | NT_187584.1 |
| NT_187585.1 | Chr11|NT_187585.1 | 4 | 4 | Remapped | NT_187585.1 |
| NT_187586.1 | Chr11|NT_187586.1 | 9 | 9 | Remapped | NT_187586.1 |
| NW_003871073.1 | Chr11|NW_003871073.1 | 1 | 1 | Remapped | NW_003871073.1 |
| NW_011332695.1 | Chr11|NW_011332695.1 | 1 | 1 | Remapped | NW_011332695.1 |
| NW_015148966.1 | Chr11|NW_015148966.1 | 10 | 10 | Remapped | NW_015148966.1 |
| NW_019805495.1 | Chr11|NW_019805495.1 | 2 | 2 | Remapped | NW_019805495.1 |
| NW_019805497.1 | Chr11|NW_019805497.1 | 1 | 1 | Remapped | NW_019805497.1 |
| NT_187658.1 | Chr12|NT_187658.1 | 2 | 2 | Remapped | NT_187658.1 |
| NT_187587.1 | Chr12|NT_187587.1 | 2 | 2 | Remapped | NT_187587.1 |
| NT_187590.1 | Chr12|NT_187590.1 | 2 | 2 | Remapped | NT_187590.1 |
| NT_187591.1 | Chr12|NT_187591.1 | 1 | 1 | Remapped | NT_187591.1 |
| NW_003315941.1 | Chr12|NW_003315941.1 | 1 | 1 | Remapped | NW_003315941.1 |
| NW_003571049.1 | Chr12|NW_003571049.1 | 8 | 8 | Remapped | NW_003571049.1 |
| NW_003571050.1 | Chr12|NW_003571050.1 | 3 | 3 | Remapped | NW_003571050.1 |
| NW_011332696.1 | Chr12|NW_011332696.1 | 3 | 3 | Remapped | NW_011332696.1 |
| NW_013171809.1 | Chr12|NW_013171809.1 | 2 | 2 | Remapped | NW_013171809.1 |
| NW_015148967.1 | Chr12|NW_015148967.1 | 3 | 3 | Remapped | NW_015148967.1 |
| NW_018654718.1 | Chr12|NW_018654718.1 | 10 | 10 | Remapped | NW_018654718.1 |
| NW_018654720.1 | Chr12|NW_018654720.1 | 1 | 1 | Remapped | NW_018654720.1 |
| NW_019805499.1 | Chr12|NW_019805499.1 | 2 | 2 | Remapped | NW_019805499.1 |
| NT_187592.1 | Chr13|NT_187592.1 | 4 | 4 | Remapped | NT_187592.1 |
| NT_187594.1 | Chr13|NT_187594.1 | 3 | 3 | Remapped | NT_187594.1 |
| NW_009646205.1 | Chr13|NW_009646205.1 | 1 | 1 | Remapped | NW_009646205.1 |
| NW_011332698.1 | Chr13|NW_011332698.1 | 8 | 8 | Remapped | NW_011332698.1 |
| NW_011332699.1 | Chr13|NW_011332699.1 | 17 | 17 | Remapped | NW_011332699.1 |
| NT_113796.3 | Chr14|NT_113796.3 | 6 | 6 | Remapped | NT_113796.3 |
| NT_187599.1 | Chr14|NT_187599.1 | 4 | 4 | Remapped | NT_187599.1 |
| NT_187600.1 | Chr14|NT_187600.1 | 20 | 20 | Remapped | NT_187600.1 |
| NT_187601.1 | Chr14|NT_187601.1 | 6 | 6 | Remapped | NT_187601.1 |
| NW_018654722.1 | Chr14|NW_018654722.1 | 3 | 3 | Remapped | NW_018654722.1 |
| NT_187659.1 | Chr15|NT_187659.1 | 6 | 6 | Remapped | NT_187659.1 |
| NT_187660.1 | Chr15|NT_187660.1 | 22 | 22 | Remapped | NT_187660.1 |
| NT_187382.1 | Chr15|NT_187382.1 | 1 | 1 | Remapped | NT_187382.1 |
| NT_187602.1 | Chr15|NT_187602.1 | 1 | 1 | Remapped | NT_187602.1 |
| NT_187603.1 | Chr15|NT_187603.1 | 6 | 6 | Remapped | NT_187603.1 |
| NT_187604.1 | Chr15|NT_187604.1 | 5 | 5 | Remapped | NT_187604.1 |
| NT_187605.1 | Chr15|NT_187605.1 | 2 | 2 | Remapped | NT_187605.1 |
| NT_187606.1 | Chr15|NT_187606.1 | 12 | 12 | Remapped | NT_187606.1 |
| NW_003315943.1 | Chr15|NW_003315943.1 | 10 | 10 | Remapped | NW_003315943.1 |
| NW_003315944.2 | Chr15|NW_003315944.2 | 1 | 1 | Remapped | NW_003315944.2 |
| NW_011332701.1 | Chr15|NW_011332701.1 | 23 | 23 | Remapped | NW_011332701.1 |
| NW_012132920.1 | Chr15|NW_012132920.1 | 1 | 1 | Remapped | NW_012132920.1 |
| NT_187607.1 | Chr16|NT_187607.1 | 13 | 13 | Remapped | NT_187607.1 |
| NT_187608.1 | Chr16|NT_187608.1 | 1 | 1 | Remapped | NT_187608.1 |
| NT_187610.1 | Chr16|NT_187610.1 | 3 | 3 | Remapped | NT_187610.1 |
| NW_013171812.1 | Chr16|NW_013171812.1 | 1 | 1 | Remapped | NW_013171812.1 |
| NW_013171813.1 | Chr16|NW_013171813.1 | 1 | 1 | Remapped | NW_013171813.1 |
| NW_017852933.1 | Chr16|NW_017852933.1 | 4 | 4 | Remapped | NW_017852933.1 |
| NW_019805500.1 | Chr16|NW_019805500.1 | 3 | 3 | Remapped | NW_019805500.1 |
| NT_187661.1 | Chr17|NT_187661.1 | 6 | 6 | Remapped | NT_187661.1 |
| NT_187662.1 | Chr17|NT_187662.1 | 7 | 7 | Remapped | NT_187662.1 |
| NT_187663.1 | Chr17|NT_187663.1 | 8 | 8 | Remapped | NT_187663.1 |
| NT_187664.1 | Chr17|NT_187664.1 | 3 | 3 | Remapped | NT_187664.1 |
| NT_167251.2 | Chr17|NT_167251.2 | 1 | 1 | Remapped | NT_167251.2 |
| NT_187611.1 | Chr17|NT_187611.1 | 3 | 3 | Remapped | NT_187611.1 |
| NT_187612.1 | Chr17|NT_187612.1 | 5 | 5 | Remapped | NT_187612.1 |
| NT_187613.1 | Chr17|NT_187613.1 | 5 | 5 | Remapped | NT_187613.1 |
| NT_187614.1 | Chr17|NT_187614.1 | 23 | 23 | Remapped | NT_187614.1 |
| NT_187615.1 | Chr17|NT_187615.1 | 2 | 2 | Remapped | NT_187615.1 |
| NW_003315952.3 | Chr17|NW_003315952.3 | 9 | 9 | Remapped | NW_003315952.3 |
| NW_003315953.2 | Chr17|NW_003315953.2 | 1 | 1 | Remapped | NW_003315953.2 |
| NW_003315954.1 | Chr17|NW_003315954.1 | 5 | 5 | Remapped | NW_003315954.1 |
| NW_003315955.1 | Chr17|NW_003315955.1 | 4 | 4 | Remapped | NW_003315955.1 |
| NW_003871091.1 | Chr17|NW_003871091.1 | 1 | 1 | Remapped | NW_003871091.1 |
| NW_016107299.1 | Chr17|NW_016107299.1 | 2 | 2 | Remapped | NW_016107299.1 |
| NW_017363817.1 | Chr17|NW_017363817.1 | 3 | 3 | Remapped | NW_017363817.1 |
| NW_017363819.1 | Chr17|NW_017363819.1 | 1 | 1 | Remapped | NW_017363819.1 |
| NT_187665.1 | Chr18|NT_187665.1 | 6 | 6 | Remapped | NT_187665.1 |
| NT_187666.1 | Chr18|NT_187666.1 | 4 | 4 | Remapped | NT_187666.1 |
| NT_187617.1 | Chr18|NT_187617.1 | 4 | 4 | Remapped | NT_187617.1 |
| NW_003315956.1 | Chr18|NW_003315956.1 | 1 | 1 | Remapped | NW_003315956.1 |
| NW_003315957.1 | Chr18|NW_003315957.1 | 1 | 1 | Remapped | NW_003315957.1 |
| NW_003315958.1 | Chr18|NW_003315958.1 | 3 | 3 | Remapped | NW_003315958.1 |
| NW_003315961.1 | Chr18|NW_003315961.1 | 4 | 4 | Remapped | NW_003315961.1 |
| NW_013171814.1 | Chr18|NW_013171814.1 | 1 | 1 | Remapped | NW_013171814.1 |
| NW_018654724.1 | Chr18|NW_018654724.1 | 1 | 1 | Remapped | NW_018654724.1 |
| NW_019805503.1 | Chr18|NW_019805503.1 | 1 | 1 | Remapped | NW_019805503.1 |
| NT_187693.1 | Chr19|NT_187693.1 | 9 | 9 | Remapped | NT_187693.1 |
| NW_003571061.2 | Chr19|NW_003571061.2 | 4 | 4 | Remapped | NW_003571061.2 |
| NW_003571057.2 | Chr19|NW_003571057.2 | 4 | 4 | Remapped | NW_003571057.2 |
| NW_003571058.2 | Chr19|NW_003571058.2 | 4 | 4 | Remapped | NW_003571058.2 |
| NW_003571059.2 | Chr19|NW_003571059.2 | 4 | 4 | Remapped | NW_003571059.2 |
| NW_003571060.1 | Chr19|NW_003571060.1 | 5 | 5 | Remapped | NW_003571060.1 |
| NW_003571056.2 | Chr19|NW_003571056.2 | 4 | 4 | Remapped | NW_003571056.2 |
| NW_003571055.2 | Chr19|NW_003571055.2 | 4 | 4 | Remapped | NW_003571055.2 |
| NT_187620.1 | Chr19|NT_187620.1 | 1 | 1 | Remapped | NT_187620.1 |
| NT_187621.1 | Chr19|NT_187621.1 | 3 | 3 | Remapped | NT_187621.1 |
| NT_187622.1 | Chr19|NT_187622.1 | 3 | 3 | Remapped | NT_187622.1 |
| NW_003315962.1 | Chr19|NW_003315962.1 | 3 | 3 | Remapped | NW_003315962.1 |
| NW_003315964.2 | Chr19|NW_003315964.2 | 1 | 1 | Remapped | NW_003315964.2 |
| NW_003315965.1 | Chr19|NW_003315965.1 | 1 | 1 | Remapped | NW_003315965.1 |
| NW_003571054.1 | Chr19|NW_003571054.1 | 5 | 5 | Remapped | NW_003571054.1 |
| NW_009646206.1 | Chr19|NW_009646206.1 | 2 | 2 | Remapped | NW_009646206.1 |
| NW_014040929.1 | Chr19|NW_014040929.1 | 3 | 3 | Remapped | NW_014040929.1 |
| NT_187623.1 | Chr20|NT_187623.1 | 3 | 3 | Remapped | NT_187623.1 |
| NT_187624.1 | Chr20|NT_187624.1 | 3 | 3 | Remapped | NT_187624.1 |
| NT_187626.1 | Chr21|NT_187626.1 | 3 | 3 | Remapped | NT_187626.1 |
| NT_187627.1 | Chr21|NT_187627.1 | 1 | 1 | Remapped | NT_187627.1 |
| NT_187628.1 | Chr21|NT_187628.1 | 2 | 2 | Remapped | NT_187628.1 |
| NW_003315970.2 | Chr21|NW_003315970.2 | 1 | 1 | Remapped | NW_003315970.2 |
| NT_187682.1 | Chr22|NT_187682.1 | 1 | 1 | Remapped | NT_187682.1 |
| NW_015148969.1 | Chr22|NW_015148969.1 | 2 | 2 | Remapped | NW_015148969.1 |
| NT_187629.1 | Chr22|NT_187629.1 | 2 | 2 | Remapped | NT_187629.1 |
| NT_187630.1 | Chr22|NT_187630.1 | 1 | 1 | Remapped | NT_187630.1 |
| NT_187632.1 | Chr22|NT_187632.1 | 1 | 1 | Remapped | NT_187632.1 |
| NT_187633.1 | Chr22|NT_187633.1 | 3 | 3 | Remapped | NT_187633.1 |
| NW_003315972.2 | Chr22|NW_003315972.2 | 1 | 1 | Remapped | NW_003315972.2 |
| NT_187667.1 | ChrX|NT_187667.1 | 8 | 8 | Remapped | NT_187667.1 |
| NW_017363820.1 | ChrX|NW_017363820.1 | 2 | 2 | Remapped | NW_017363820.1 |
| NT_187634.1 | ChrX|NT_187634.1 | 7 | 7 | Remapped | NT_187634.1 |
| NW_009646209.1 | ChrY|NW_009646209.1 | 10 | 10 | Remapped | NW_009646209.1 |
| NW_018654725.1 | ChrY|NW_018654725.1 | 1 | 1 | Remapped | NW_018654725.1 |
| NW_018654726.1 | ChrY|NW_018654726.1 | 1 | 1 | Remapped | NW_018654726.1 |
| Sequence ID | Chr | Number of Variant Regions | Number of Variant Calls | Placement type | Link to graphical display |
|---|---|---|---|---|---|
| NC_000001.10 | Chr1 | 962 | 962 | Submitted | NC_000001.10 |
| NC_000002.11 | Chr2 | 804 | 804 | Submitted | NC_000002.11 |
| NC_000003.11 | Chr3 | 525 | 525 | Submitted | NC_000003.11 |
| NC_000004.11 | Chr4 | 731 | 731 | Submitted | NC_000004.11 |
| NC_000005.9 | Chr5 | 610 | 610 | Submitted | NC_000005.9 |
| NC_000006.11 | Chr6 | 557 | 557 | Submitted | NC_000006.11 |
| NC_000007.13 | Chr7 | 745 | 745 | Submitted | NC_000007.13 |
| NC_000008.10 | Chr8 | 564 | 564 | Submitted | NC_000008.10 |
| NC_000009.11 | Chr9 | 646 | 646 | Submitted | NC_000009.11 |
| NC_000010.10 | Chr10 | 568 | 568 | Submitted | NC_000010.10 |
| NC_000011.9 | Chr11 | 507 | 507 | Submitted | NC_000011.9 |
| NC_000012.11 | Chr12 | 491 | 491 | Submitted | NC_000012.11 |
| NC_000013.10 | Chr13 | 296 | 296 | Submitted | NC_000013.10 |
| NC_000014.8 | Chr14 | 305 | 305 | Submitted | NC_000014.8 |
| NC_000015.9 | Chr15 | 393 | 393 | Submitted | NC_000015.9 |
| NC_000016.9 | Chr16 | 457 | 457 | Submitted | NC_000016.9 |
| NC_000017.10 | Chr17 | 393 | 393 | Submitted | NC_000017.10 |
| NC_000018.9 | Chr18 | 309 | 309 | Submitted | NC_000018.9 |
| NC_000019.9 | Chr19 | 429 | 429 | Submitted | NC_000019.9 |
| NC_000020.10 | Chr20 | 296 | 296 | Submitted | NC_000020.10 |
| NC_000021.8 | Chr21 | 330 | 330 | Submitted | NC_000021.8 |
| NC_000022.10 | Chr22 | 235 | 235 | Submitted | NC_000022.10 |
| NC_000023.10 | ChrX | 402 | 402 | Submitted | NC_000023.10 |
| NC_000024.9 | ChrY | 163 | 163 | Submitted | NC_000024.9 |
| Variant Region remap status | Variant Call remap status | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Sequence ID | Chr | Variant Regions on source | Perfect | Good | Pass | Fail | Mult | Variant Calls on source | Perfect | Good | Pass | Fail | Mult |
| NC_000001.10 | Chr1 | 962 | 684 | 65 | 22 | 38 | 356 | 962 | 684 | 65 | 22 | 38 | 356 |
| NC_000002.11 | Chr2 | 804 | 645 | 4 | 11 | 15 | 264 | 804 | 645 | 4 | 11 | 15 | 264 |
| NC_000003.11 | Chr3 | 525 | 413 | 3 | 2 | 2 | 239 | 525 | 413 | 3 | 2 | 2 | 239 |
| NC_000004.11 | Chr4 | 731 | 590 | 4 | 4 | 4 | 321 | 731 | 590 | 4 | 4 | 4 | 321 |
| NC_000005.9 | Chr5 | 610 | 480 | 1 | 1 | 3 | 251 | 610 | 480 | 1 | 1 | 3 | 251 |
| NC_000006.11 | Chr6 | 557 | 438 | 3 | 4 | 8 | 254 | 557 | 438 | 3 | 4 | 8 | 254 |
| NC_000007.13 | Chr7 | 745 | 566 | 14 | 9 | 13 | 303 | 745 | 566 | 14 | 9 | 13 | 303 |
| NC_000008.10 | Chr8 | 564 | 369 | 0 | 8 | 2 | 270 | 564 | 369 | 0 | 8 | 2 | 270 |
| NC_000009.11 | Chr9 | 646 | 510 | 28 | 18 | 30 | 144 | 646 | 510 | 28 | 18 | 30 | 144 |
| NC_000010.10 | Chr10 | 568 | 425 | 10 | 10 | 10 | 318 | 568 | 425 | 10 | 10 | 10 | 318 |
| NC_000011.9 | Chr11 | 507 | 394 | 1 | 2 | 6 | 212 | 507 | 394 | 1 | 2 | 6 | 212 |
| NC_000012.11 | Chr12 | 491 | 376 | 1 | 2 | 7 | 228 | 491 | 376 | 1 | 2 | 7 | 228 |
| NC_000013.10 | Chr13 | 296 | 220 | 1 | 0 | 5 | 169 | 296 | 220 | 1 | 0 | 5 | 169 |
| NC_000014.8 | Chr14 | 305 | 218 | 5 | 1 | 0 | 168 | 305 | 218 | 5 | 1 | 0 | 168 |
| NC_000015.9 | Chr15 | 393 | 276 | 8 | 2 | 6 | 183 | 393 | 276 | 8 | 2 | 6 | 183 |
| NC_000016.9 | Chr16 | 457 | 334 | 1 | 3 | 5 | 262 | 457 | 334 | 1 | 3 | 5 | 262 |
| NC_000017.10 | Chr17 | 393 | 267 | 7 | 2 | 6 | 188 | 393 | 267 | 7 | 2 | 6 | 188 |
| NC_000018.9 | Chr18 | 309 | 247 | 1 | 1 | 4 | 124 | 309 | 247 | 1 | 1 | 4 | 124 |
| NC_000019.9 | Chr19 | 429 | 351 | 5 | 3 | 3 | 155 | 429 | 351 | 5 | 3 | 3 | 155 |
| NC_000020.10 | Chr20 | 296 | 243 | 1 | 1 | 4 | 120 | 296 | 243 | 1 | 1 | 4 | 120 |
| NC_000021.8 | Chr21 | 330 | 246 | 1 | 1 | 7 | 164 | 330 | 246 | 1 | 1 | 7 | 164 |
| NC_000022.10 | Chr22 | 235 | 191 | 9 | 2 | 4 | 60 | 235 | 191 | 9 | 2 | 4 | 60 |
| NC_000023.10 | ChrX | 402 | 302 | 17 | 10 | 18 | 111 | 402 | 302 | 17 | 10 | 18 | 111 |
| NC_000024.9 | ChrY | 163 | 126 | 0 | 3 | 8 | 52 | 163 | 126 | 0 | 3 | 8 | 52 |
Samplesets
Number of Samplesets: 1
- Name:
- KWP1
- Size:
- 1 (sample data not available)
- Organisms:
- Homo sapiens
- Sampleset Phenotype(s):
- None reported
- Sex:
- Male
Experimental Details
| Experiment ID | Type | Method | Analysis | Platforms | Number of Variant Calls |
|---|---|---|---|---|---|
| 1 | Discovery | Sequencing | Read depth and paired-end mapping | Illumina HiSeq 2000 | 11,116 |