esv3584966
- Organism: Homo sapiens
- Study:estd213 (Mokhtar et al. 2014)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:37,499
- Publication(s):Mokhtar et al. 2014
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 976 SVs from 83 studies. See in: genome view
Overlapping variant regions from other studies: 976 SVs from 83 studies. See in: genome view
Overlapping variant regions from other studies: 625 SVs from 30 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| esv3584966 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000020.11 | Chr20 | 1,580,934 | 1,618,432 |
| esv3584966 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000020.10 | Chr20 | 1,561,580 | 1,599,078 |
| esv3584966 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000020.9 | Chr20 | 1,509,580 | 1,547,078 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| essv9838593 | copy number gain | OA062 | SNP array | Probe signal intensity | 28 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| essv9838593 | Remapped | Perfect | NC_000020.11:g.(?_ 1580934)_(1618432_ ?)dup | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 1,580,934 | 1,618,432 |
| essv9838593 | Remapped | Perfect | NC_000020.10:g.(?_ 1561580)_(1599078_ ?)dup | GRCh37.p13 | First Pass | NC_000020.10 | Chr20 | 1,561,580 | 1,599,078 |
| essv9838593 | Submitted genomic | NC_000020.9:g.(?_1 509580)_(1547078_? )dup | NCBI36 (hg18) | NC_000020.9 | Chr20 | 1,509,580 | 1,547,078 |