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dbVar

Database of genomic structural variation

nsv5420120

Organism: Homo sapiens

Study:nstd206 (Byrska-Bishop et al. 2022)
Variant Type:copy number variation
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:10,451

Publication(s):Byrska-Bishop et al. 2022

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 349 SVs from 24 studies. See in: genome view

Submitted genomic56,876,388-56,886,838

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5420120	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000024.10	ChrY	56,876,388	56,886,838
nsv5420120	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000024.9	ChrY	59,022,535	59,032,985

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv17743019	copy number variation	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv17743019	Submitted genomic		GRCh38 (hg38)		NC_000024.10	ChrY	56,876,388	56,886,838
nssv17743019	Remapped	Perfect	GRCh37.p13	First Pass	NC_000024.9	ChrY	59,022,535	59,032,985

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv17743019	0.5	1599	3198

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