nsv2639684
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:18
- Description:MOTIF=[AAAC],NS=[301],REF=[4.5],RL=[18],RPA=[3
.0],RU=[AAAC],QUAL=[318966] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 413 SVs from 36 studies. See in: genome view
Overlapping variant regions from other studies: 11 SVs from 6 studies. See in: genome view
Overlapping variant regions from other studies: 417 SVs from 36 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2639684 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 7,554,745 | 7,554,762 |
| nsv2639684 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NW_003315928.1 | Chr9|NW_00 3315928.1 | 140,564 | 140,581 |
| nsv2639684 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000009.11 | Chr9 | 7,554,745 | 7,554,762 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv12825064 | short tandem repeat | (AAAC) 3 | Sequencing | Genotyping |
| nssv12825065 | short tandem repeat | (AAAC) 4.5 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv12825064 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_003315928.1 | Chr9|NW_00 3315928.1 | 140,564 | 140,581 |
| nssv12825065 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_003315928.1 | Chr9|NW_00 3315928.1 | 140,564 | 140,581 |
| nssv12825064 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 7,554,745 | 7,554,762 |
| nssv12825065 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 7,554,745 | 7,554,762 |
| nssv12825064 | Submitted genomic | GRCh37 (hg19) | NC_000009.11 | Chr9 | 7,554,745 | 7,554,762 | ||
| nssv12825065 | Submitted genomic | GRCh37 (hg19) | NC_000009.11 | Chr9 | 7,554,745 | 7,554,762 |