nsv2734612
- Organism: Homo sapiens
- Study:nstd130 (Leppa et al. 2016)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:2
- Validation:Not tested
- Clinical Assertions: No
- Region Size:10,869
- Publication(s):Leppa et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 423 SVs from 40 studies. See in: genome view
Overlapping variant regions from other studies: 21 SVs from 14 studies. See in: genome view
Overlapping variant regions from other studies: 427 SVs from 40 studies. See in: genome view
Overlapping variant regions from other studies: 12 SVs from 8 studies. See in: genome view
Overlapping variant regions from other studies: 240 SVs from 15 studies. See in: genome view
Variant Region Placement Information
Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nsv2734612 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 7,505,902 | 7,516,770 |
nsv2734612 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NW_003315928.1 | Chr9|NW_00 3315928.1 | 91,721 | 102,589 |
nsv2734612 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 7,505,902 | 7,516,770 |
nsv2734612 | Remapped | Perfect | GRCh37.p13 | PATCHES | Second Pass | NW_003315928.1 | Chr9|NW_00 3315928.1 | 91,721 | 102,589 |
nsv2734612 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 7,495,902 | 7,506,770 |
Variant Call Information
Variant Call ID | Type | Method | Analysis |
---|---|---|---|
nssv13612564 | deletion | SNP array | Probe signal intensity |
nssv13616777 | deletion | SNP array | Probe signal intensity |
Variant Call Placement Information
Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
---|---|---|---|---|---|---|---|---|---|
nssv13612564 | Remapped | Perfect | NW_003315928.1:g.( ?_91721)_(102589_? )del | GRCh38.p12 | Second Pass | NW_003315928.1 | Chr9|NW_00 3315928.1 | 91,721 | 102,589 |
nssv13616777 | Remapped | Perfect | NW_003315928.1:g.( ?_91721)_(102589_? )del | GRCh38.p12 | Second Pass | NW_003315928.1 | Chr9|NW_00 3315928.1 | 91,721 | 102,589 |
nssv13612564 | Remapped | Perfect | NC_000009.12:g.(?_ 7505902)_(7516770_ ?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 7,505,902 | 7,516,770 |
nssv13616777 | Remapped | Perfect | NC_000009.12:g.(?_ 7505902)_(7516770_ ?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 7,505,902 | 7,516,770 |
nssv13612564 | Remapped | Perfect | NW_003315928.1:g.( ?_91721)_(102589_? )del | GRCh37.p13 | Second Pass | NW_003315928.1 | Chr9|NW_00 3315928.1 | 91,721 | 102,589 |
nssv13616777 | Remapped | Perfect | NW_003315928.1:g.( ?_91721)_(102589_? )del | GRCh37.p13 | Second Pass | NW_003315928.1 | Chr9|NW_00 3315928.1 | 91,721 | 102,589 |
nssv13612564 | Remapped | Perfect | NC_000009.11:g.(?_ 7505902)_(7516770_ ?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 7,505,902 | 7,516,770 |
nssv13616777 | Remapped | Perfect | NC_000009.11:g.(?_ 7505902)_(7516770_ ?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 7,505,902 | 7,516,770 |
nssv13612564 | Submitted genomic | NC_000009.10:g.(?_ 7495902)_(7506770_ ?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 7,495,902 | 7,506,770 | ||
nssv13616777 | Submitted genomic | NC_000009.10:g.(?_ 7495902)_(7506770_ ?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 7,495,902 | 7,506,770 |