nsv2735201
- Organism: Homo sapiens
- Study:nstd130 (Leppa et al. 2016)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:NCBI36 (hg18)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:16,703
- Publication(s):Leppa et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 428 SVs from 42 studies. See in: genome view
Overlapping variant regions from other studies: 25 SVs from 15 studies. See in: genome view
Overlapping variant regions from other studies: 432 SVs from 42 studies. See in: genome view
Overlapping variant regions from other studies: 13 SVs from 9 studies. See in: genome view
Overlapping variant regions from other studies: 240 SVs from 15 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv2735201 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 7,505,902 | 7,522,604 |
| nsv2735201 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NW_003315928.1 | Chr9|NW_00 3315928.1 | 91,721 | 108,423 |
| nsv2735201 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | First Pass | NC_000009.11 | Chr9 | 7,505,902 | 7,522,604 |
| nsv2735201 | Remapped | Perfect | GRCh37.p13 | PATCHES | Second Pass | NW_003315928.1 | Chr9|NW_00 3315928.1 | 91,721 | 108,423 |
| nsv2735201 | Submitted genomic | NCBI36 (hg18) | Primary Assembly | NC_000009.10 | Chr9 | 7,495,902 | 7,512,604 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv13612856 | deletion | SNP array | Probe signal intensity |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv13612856 | Remapped | Perfect | NW_003315928.1:g.( ?_91721)_(108423_? )del | GRCh38.p12 | Second Pass | NW_003315928.1 | Chr9|NW_00 3315928.1 | 91,721 | 108,423 |
| nssv13612856 | Remapped | Perfect | NC_000009.12:g.(?_ 7505902)_(7522604_ ?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 7,505,902 | 7,522,604 |
| nssv13612856 | Remapped | Perfect | NW_003315928.1:g.( ?_91721)_(108423_? )del | GRCh37.p13 | Second Pass | NW_003315928.1 | Chr9|NW_00 3315928.1 | 91,721 | 108,423 |
| nssv13612856 | Remapped | Perfect | NC_000009.11:g.(?_ 7505902)_(7522604_ ?)del | GRCh37.p13 | First Pass | NC_000009.11 | Chr9 | 7,505,902 | 7,522,604 |
| nssv13612856 | Submitted genomic | NC_000009.10:g.(?_ 7495902)_(7512604_ ?)del | NCBI36 (hg18) | NC_000009.10 | Chr9 | 7,495,902 | 7,512,604 |