nsv4365778
- Organism: Homo sapiens
- Study:nstd173 (Zarrei et al. 2019)
- Variant Type:copy number variation
- Method Type:SNP array
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:90,360
- Publication(s):Zarrei et al. 2019
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 513 SVs from 50 studies. See in: genome view
Overlapping variant regions from other studies: 91 SVs from 19 studies. See in: genome view
Overlapping variant regions from other studies: 517 SVs from 50 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4365778 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000009.12 | Chr9 | 7,449,633 | 7,519,064 |
| nsv4365778 | Remapped | Pass | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NW_003315928.1 | Chr9|NW_00 3315928.1 | 14,524 | 104,883 |
| nsv4365778 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000009.11 | Chr9 | 7,449,633 | 7,519,064 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Other Calls in this Sample and Study |
|---|---|---|---|---|---|
| nssv15699755 | copy number loss | 226265 | SNP array | Genotyping | 20 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Inner Start | Inner Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv15699755 | Remapped | Pass | NW_003315928.1:g.( ?_14524)_(104883_? )del | GRCh38.p12 | Second Pass | NW_003315928.1 | Chr9|NW_00 3315928.1 | 14,524 | 104,883 |
| nssv15699755 | Remapped | Perfect | NC_000009.12:g.(?_ 7449633)_(7519064_ ?)del | GRCh38.p12 | First Pass | NC_000009.12 | Chr9 | 7,449,633 | 7,519,064 |
| nssv15699755 | Submitted genomic | NC_000009.11:g.(?_ 7449633)_(7519064_ ?)del | GRCh37 (hg19) | NC_000009.11 | Chr9 | 7,449,633 | 7,519,064 |