nsv4714533
- Organism: Homo sapiens
- Study:nstd195 (Mwapagha et al. 2021)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:7,452
- Publication(s):Mwapagha et al. 2021
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 494 SVs from 60 studies. See in: genome view
Overlapping variant regions from other studies: 105 SVs from 32 studies. See in: genome view
Overlapping variant regions from other studies: 78 SVs from 29 studies. See in: genome view
Overlapping variant regions from other studies: 273 SVs from 44 studies. See in: genome view
Overlapping variant regions from other studies: 499 SVs from 61 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv4714533 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000015.10 | Chr15 | 28,455,805 | 28,463,255 |
| nsv4714533 | Remapped | Good | GRCh38.p12 | ALT_REF_LOCI_2 | Second Pass | NT_187660.1 | Chr15|NT_1 87660.1 | 731,604 | 739,055 |
| nsv4714533 | Remapped | Perfect | GRCh38.p12 | ALT_REF_LOCI_1 | Second Pass | NW_003315943.1 | Chr15|NW_0 03315943.1 | 155,385 | 162,835 |
| nsv4714533 | Remapped | Good | GRCh38.p12 | PATCHES | Second Pass | NW_011332701.1 | Chr15|NW_0 11332701.1 | 617,818 | 625,269 |
| nsv4714533 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000015.9 | Chr15 | 28,700,951 | 28,708,401 |
Variant Call Information
| Variant Call ID | Type | Sample ID | Method | Analysis | Copy number | Other Calls in this Sample and Study |
|---|---|---|---|---|---|---|
| nssv16240295 | copy number variation | M478 | Sequencing | Paired-end mapping | 3 | 4,557 |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv16240295 | Remapped | Good | GRCh38.p12 | Second Pass | NT_187660.1 | Chr15|NT_1 87660.1 | 731,604 | 739,055 |
| nssv16240295 | Remapped | Perfect | GRCh38.p12 | Second Pass | NW_003315943.1 | Chr15|NW_0 03315943.1 | 155,385 | 162,835 |
| nssv16240295 | Remapped | Good | GRCh38.p12 | Second Pass | NW_011332701.1 | Chr15|NW_0 11332701.1 | 617,818 | 625,269 |
| nssv16240295 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000015.10 | Chr15 | 28,455,805 | 28,463,255 |
| nssv16240295 | Submitted genomic | GRCh37 (hg19) | NC_000015.9 | Chr15 | 28,700,951 | 28,708,401 |