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dbVar

Database of genomic structural variation

nsv4775083

Organism: Homo sapiens

Study:nstd200 (Abel et al. 2020)
Variant Type:mobile element deletion
Method Type:Sequencing
Submitted on:GRCh37

Variant Calls:1
Validation:Not tested
Clinical Assertions: No
Region Size:308

Publication(s):Abel et al. 2020

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 117 SVs from 33 studies. See in: genome view

Remapped(Score: Perfect):52,047,805-52,048,425

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv4775083	Remapped	Perfect	GRCh38.p12	Primary Assembly	First Pass	NC_000012.12	Chr12	52,047,872 (-67, +228)	52,048,179 (-238, +246)
nsv4775083	Submitted genomic		GRCh37 (hg19)	Primary Assembly		NC_000012.11	Chr12	52,441,656 (-67, +228)	52,441,963 (-238, +246)

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv16297167	alu deletion	Sequencing	Sequence alignment

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv16297167	Remapped	Perfect	NC_000012.12:g.(52 047805_52048100)_( 52047941_52048425) del	GRCh38.p12	First Pass	NC_000012.12	Chr12	52,047,872 (-67, +228)	52,048,179 (-238, +246)
nssv16297167	Submitted genomic		NC_000012.11:g.(52 441589_52441884)_( 52441725_52442209) del	GRCh37 (hg19)		NC_000012.11	Chr12	52,441,656 (-67, +228)	52,441,963 (-238, +246)

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype Information

Variant Call ID	Allele Frequency (AF)	Allele Count (AC)	Allele Number (AN)
nssv16297167	0.016	273	16834

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