nsv5343608
- Organism: Homo sapiens
- Study:nstd200 (Abel et al. 2020)
- Variant Type:translocation
- Method Type:Sequencing
- Submitted on:GRCh37
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:1
- Publication(s):Abel et al. 2020
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 108 SVs from 18 studies. See in: genome view
Overlapping variant regions from other studies: 160 SVs from 31 studies. See in: genome view
Overlapping variant regions from other studies: 108 SVs from 18 studies. See in: genome view
Overlapping variant regions from other studies: 160 SVs from 31 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|---|
| nsv5343608 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000003.12 | Chr3 | 123,151,735 | 123,151,735 | - |
| nsv5343608 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000020.11 | Chr20 | 63,883,859 | 63,883,859 | - |
| nsv5343608 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000003.11 | Chr3 | 122,870,582 | 122,870,582 | - | ||
| nsv5343608 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000020.10 | Chr20 | 62,515,212 | 62,515,212 | - |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv16414377 | interchromosomal translocation | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop | strand |
|---|---|---|---|---|---|---|---|---|---|
| nssv16414377 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000003.12 | Chr3 | 123,151,735 | 123,151,735 | - |
| nssv16414377 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000020.11 | Chr20 | 63,883,859 | 63,883,859 | - |
| nssv16414377 | Submitted genomic | GRCh37 (hg19) | NC_000003.11 | Chr3 | 122,870,582 | 122,870,582 | - | ||
| nssv16414377 | Submitted genomic | GRCh37 (hg19) | NC_000020.10 | Chr20 | 62,515,212 | 62,515,212 | - |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv16414377 | 0.004 | 65 | 16834 |