nsv5495061
- Organism: Homo sapiens
- Study:nstd206 (Byrska-Bishop et al. 2022)
- Variant Type:copy number variation
- Method Type:Sequencing
- Submitted on:GRCh38
- Variant Calls:1
- Validation:Not tested
- Clinical Assertions: No
- Region Size:668
- Publication(s):Byrska-Bishop et al. 2022
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 106 SVs from 16 studies. See in: genome view
Overlapping variant regions from other studies: 105 SVs from 16 studies. See in: genome view
Overlapping variant regions from other studies: 6 SVs from 3 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv5495061 | Submitted genomic | GRCh38 (hg38) | Primary Assembly | NC_000011.10 | Chr11 | 119,006,648 | 119,007,315 | ||
| nsv5495061 | Remapped | Perfect | GRCh37.p13 | Primary Assembly | Second Pass | NC_000011.9 | Chr11 | 118,877,358 | 118,878,025 |
| nsv5495061 | Remapped | Perfect | GRCh37.p13 | PATCHES | First Pass | NW_003871076.1 | Chr11|NW_0 03871076.1 | 28,248 | 28,915 |
Variant Call Information
| Variant Call ID | Type | Method | Analysis |
|---|---|---|---|
| nssv17052207 | deletion | Sequencing | Sequence alignment |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | HGVS | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nssv17052207 | Submitted genomic | NC_000011.10:g.119 006648_119007315de l | GRCh38 (hg38) | NC_000011.10 | Chr11 | 119,006,648 | 119,007,315 | ||
| nssv17052207 | Remapped | Perfect | NW_003871076.1:g.2 8248_28915del | GRCh37.p13 | First Pass | NW_003871076.1 | Chr11|NW_0 03871076.1 | 28,248 | 28,915 |
| nssv17052207 | Remapped | Perfect | NC_000011.9:g.1188 77358_118878025del | GRCh37.p13 | Second Pass | NC_000011.9 | Chr11 | 118,877,358 | 118,878,025 |
No validation data were submitted for this variant
No clinical assertion data were submitted for this variant
Complete genotype and/or allele frequency data for this study can be found on dbVar's FTP site.
Genotype Information
| Variant Call ID | Allele Frequency (AF) | Allele Count (AC) | Allele Number (AN) |
|---|---|---|---|
| nssv17052207 | <0.001 | 3 | 6404 |