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dbVar

Database of genomic structural variation

nsv5712735

Organism: Homo sapiens

Study:nstd211 (Chuang et al. 2021)
Variant Type:mobile element insertion
Method Type:Sequencing
Submitted on:GRCh38

Variant Calls:2
Validation:Not tested
Clinical Assertions: No
Region Size:1

Description:Insertion of a HERV mobile element relative to the reference
Publication(s):Chuang et al. 2021

Links to Other Resources

Overlapping Genes

Source: NCBI

Genome View
Variant Region Details and Evidence
Validation Information
Clinical Assertions
Genotype Information

Genome View

Select assembly:

Overlapping variant regions from other studies: 94 SVs from 21 studies. See in: genome view

Submitted genomic25,588,105-25,588,105

Variant Region Placement Information

Variant Region ID	Placement Type	Score	Assembly	Assembly Unit	Reciprocity	Sequence ID	Chr	Start	Stop
nsv5712735	Submitted genomic		GRCh38 (hg38)	Primary Assembly		NC_000001.11	Chr1	25,588,105	25,588,105
nsv5712735	Remapped	Perfect	GRCh37.p13	Primary Assembly	First Pass	NC_000001.10	Chr1	25,914,596	25,914,596

Variant Call Information

Variant Call ID	Type	Method	Analysis
nssv17214482	herv insertion	Sequencing	Other
nssv17232609	herv insertion	Sequencing	Other

Variant Call Placement Information

Variant Call ID	Placement Type	Score	HGVS	Assembly	Reciprocity	Sequence ID	Chr	Start	Stop
nssv17214482	Submitted genomic		NC_000001.11:g.255 88105_25588106ins8 656	GRCh38 (hg38)		NC_000001.11	Chr1	25,588,105	25,588,105
nssv17232609	Submitted genomic		NC_000001.11:g.255 88105_25588106ins6 38	GRCh38 (hg38)		NC_000001.11	Chr1	25,588,105	25,588,105
nssv17214482	Remapped	Perfect	NC_000001.10:g.259 14596_25914597ins8 656	GRCh37.p13	First Pass	NC_000001.10	Chr1	25,914,596	25,914,596
nssv17232609	Remapped	Perfect	NC_000001.10:g.259 14596_25914597ins6 38	GRCh37.p13	First Pass	NC_000001.10	Chr1	25,914,596	25,914,596

No validation data were submitted for this variant

No clinical assertion data were submitted for this variant

Genotype and/or allele frequency data can be found on dbVar's FTP site.

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