GEO DataSets

(Submitter supplied) see manufacturer's web site v18.0.0 Arabidopsis Custom CDF from http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF

Organism:

Arabidopsis thaliana

4 Series

1 Related Platform

100 Samples

Download data: CDF, TXT

(Submitter supplied) Based on the v14.0.0 Arabidopsis CustomCDF from http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF but processed with a novel cross-species masking technique involving taking an ANOVA for each probe to determine whether it is registering signal or noise Protocol: see manufacturer's web site

Organism:

Arabidopsis thaliana

1 Series

1 Related Platform

107 Samples

Download data: CDF

(Submitter supplied) v14.0.0 Arabidopsis CustomCDF from http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF Protocol: see manufacturer's web site

Organism:

Arabidopsis thaliana

4 Series

1 Related Platform

163 Samples

Download data: CDF

(Submitter supplied) custom CDF file based on TAIR10 annotation. Protocol: see manufacturer's web site

Organism:

Arabidopsis thaliana

3 Series

1 Related Platform

100 Samples

Download data: CDF

(Submitter supplied) This is identical to GPL198 but a custom CDF environment was used to extract data [Brainarray TAIRG, Version 12.1.0]. CDF and other files can be downloaded at: http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/12.1.0/tairg.asp Protocol: see manufacturer's web site

Organism:

Arabidopsis thaliana

3 Series

1 Related Platform

113 Samples

Download data: CDF, TXT

(Submitter supplied) CDF file was created using "aroma" tools tools avaialbale at: http://www.aroma-project.org/node/40 Protocol: see manufacturer's web site

Organism:

Arabidopsis thaliana

1 Series

1 Related Platform

12 Samples

Download data: CDF, TXT

(Submitter supplied) The custom CDF was built by uniquely mapping 232,697 probe sequences to 21,389 Arabidopsis (TAIR8) gene-based probe sets in the following manner: (i) probes that have perfect sequence identity with a single target gene were selected, (ii) probes mapping to reverse complements of genes were annotated separately as antisense probes (not used in the above counts), and finally, (iii) probes were grouped into probe sets, each corresponding to a single gene, and probe sets having at least 3 unique sequences were retained (>99% probe sets have >=5 probes). more...

Organism:

Arabidopsis thaliana

1 Series

1 Related Platform

12 Samples

Download data: CDF

(Submitter supplied) see manufacturer's web site

Organism:

Arabidopsis thaliana

2 Series

1 Related Platform

42 Samples

Download data: CDF, TXT

(Submitter supplied) see manufacturer's web site/ data processing:an alternative CDF ("tinesath1cdf") was used, where each probe is assigned uniquely to one transcript and is excluded if it aligns to a different transcript with 24 or more perfect matches (Casneuf et al. 2007) Protocol: see manufacturer's web site

Organism:

Arabidopsis thaliana

9 Series

1 Related Platform

93 Samples

Download data