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Items: 1 to 20 of 99

1.

Single-cell analysis of gene expression variation and phenotype switching in melanoma

(Submitter supplied) We combine extensive profiling of single-cell gene expression (scRNA-seq of 39,263 cells) and chromatin accessibility applied to ten genetically-homogeneous, patient-derived melanoma cultures, to examine intra- and intertumoral phenotypic heterogeneity, to identify new cell states, and to track dynamic transitions at single-cell resolution.
Organism:
Homo sapiens
Type:
Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
4 related Platforms
94 Samples
Download data: BW, TSV
Series
Accession:
GSE134432
ID:
200134432
2.

Illumina NovaSeq 6000 (Homo sapiens)

Platform
Accession:
GPL24676
ID:
100024676
3.

Illumina HiSeq 4000 (Homo sapiens)

Platform
Accession:
GPL20301
ID:
100020301
4.

Illumina NextSeq 500 (Homo sapiens)

Platform
Accession:
GPL18573
ID:
100018573
5.

Illumina HiSeq 2500 (Homo sapiens)

Platform
Accession:
GPL16791
ID:
100016791
6.

bulk MM087 SOX10-KD 72h

Organism:
Homo sapiens
Source name:
melanoma cell line
Platform:
GPL16791
Series:
GSE134432
Download data
Sample
Accession:
GSM3946530
ID:
303946530
7.

bulk MM087 NTC 72h

Organism:
Homo sapiens
Source name:
melanoma cell line
Platform:
GPL16791
Series:
GSE134432
Download data
Sample
Accession:
GSM3946529
ID:
303946529
8.

bulk MM087 no treatment (TGFb/TNFa negative control)

Organism:
Homo sapiens
Source name:
MM_no treatment
Platform:
GPL20301
Series:
GSE134432
Download data
Sample
Accession:
GSM4408003
ID:
304408003
9.

bulk MM087 TGFb/TNFa 72h

Organism:
Homo sapiens
Source name:
MM_treatment with TGFbeta and TNFalpha 72h
Platform:
GPL20301
Series:
GSE134432
Download data
Sample
Accession:
GSM4408002
ID:
304408002
10.

bulk MM057 no treatment (TGFb/TNFa negative control)

Organism:
Homo sapiens
Source name:
MM_no treatment
Platform:
GPL20301
Series:
GSE134432
Download data
Sample
Accession:
GSM4408001
ID:
304408001
11.

bulk MM057 TGFb/TNFa 72h

Organism:
Homo sapiens
Source name:
MM_treatment with TGFbeta and TNFalpha 72h
Platform:
GPL20301
Series:
GSE134432
Download data
Sample
Accession:
GSM4408000
ID:
304408000
12.

bulk MM074 no treatment (TGFb/TNFa negative control)

Organism:
Homo sapiens
Source name:
MM_no treatment
Platform:
GPL20301
Series:
GSE134432
Download data
Sample
Accession:
GSM4407999
ID:
304407999
13.

bulk MM074 TGFb/TNFa 72h

Organism:
Homo sapiens
Source name:
MM_treatment with TGFbeta and TNFalpha 72h
Platform:
GPL20301
Series:
GSE134432
Download data
Sample
Accession:
GSM4407998
ID:
304407998
14.

bulk MM168 baseline

Organism:
Homo sapiens
Source name:
melanoma cell line
Platform:
GPL20301
Series:
GSE134432
Download data
Sample
Accession:
GSM4354113
ID:
304354113
15.

bulk MM165 baseline

Organism:
Homo sapiens
Source name:
melanoma cell line
Platform:
GPL20301
Series:
GSE134432
Download data
Sample
Accession:
GSM4354111
ID:
304354111
16.

bulk MM164 baseline

Organism:
Homo sapiens
Source name:
melanoma cell line
Platform:
GPL20301
Series:
GSE134432
Download data
Sample
Accession:
GSM4354110
ID:
304354110
17.

bulk MM163 baseline

Organism:
Homo sapiens
Source name:
melanoma cell line
Platform:
GPL20301
Series:
GSE134432
Download data
Sample
Accession:
GSM4354108
ID:
304354108
18.

bulk MM161 baseline

Organism:
Homo sapiens
Source name:
melanoma cell line
Platform:
GPL20301
Series:
GSE134432
Download data
Sample
Accession:
GSM4354107
ID:
304354107
19.

bulk MM152 baseline

Organism:
Homo sapiens
Source name:
melanoma cell line
Platform:
GPL20301
Series:
GSE134432
Download data
Sample
Accession:
GSM4354105
ID:
304354105
20.

bulk MM150 baseline

Organism:
Homo sapiens
Source name:
melanoma cell line
Platform:
GPL20301
Series:
GSE134432
Download data
Sample
Accession:
GSM4354104
ID:
304354104
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Supplemental Content

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