GSE180796[Accession] - GEO DataSets - NCBI

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Items: 18

Select item 2001807961.

Anchor-Based Bisulfite Sequencing determines genome-wide DNA methylation

(Submitter supplied) Whole Genome Bisulfite Sequencing (WGBS) is the current standard for DNA methylation profiling; however, WGBS is costly as it requires sequencing coverage over the entire genome. Here we introduce Anchor-Based Bisulfite Sequencing (ABBS). We show that ABBS captures accurate DNA methylation information in Escherichia coli and mammalian cells, while requiring approximately 20 times fewer sequencing reads than WGBS. more...

Organism:: Escherichia coli; Homo sapiens

Type:: Methylation profiling by high throughput sequencing

Platforms:: GPL21222 GPL18573
15 Samples

Download data: BEDGRAPH, BW

Series

Accession:: GSE180796

ID:: 200180796

PubMed Full text in PMC Similar studies SRA Run Selector

Select item 1000212222.

Illumina NextSeq 500 (Escherichia coli)

Organism:: Escherichia coli

117 Series
2116 Samples

Platform

Accession:: GPL21222

ID:: 100021222

Select item 1000185733.

Illumina NextSeq 500 (Homo sapiens)

Organism:: Homo sapiens

12005 Series
330988 Samples

Platform

Accession:: GPL18573

ID:: 100018573

Select item 3057477644.

E. coli, B strain, untreated, ABBS primer

Organism:: Escherichia coli

Source name:: Bacterial cells

Platform:: GPL21222
Series:: GSE180796

Download data: BW

Sample

Accession:: GSM5747764

ID:: 305747764

SRA Run Selector

Select item 3057477635.

E. coli, B strain, untreated, WGBS primer

Organism:: Escherichia coli

Source name:: Bacterial cells

Platform:: GPL21222
Series:: GSE180796

Download data: BW

Sample

Accession:: GSM5747763

ID:: 305747763

SRA Run Selector

Select item 3054711246.

E. coli, K12 strain, clone 2, bisulfited, ABBS primer (A.M. library prep)

Organism:: Escherichia coli

Source name:: Bacterial cells

Platform:: GPL21222
Series:: GSE180796

Download data: BW

Sample

Accession:: GSM5471124

ID:: 305471124

SRA Run Selector

Select item 3054711237.

E. coli, K12 strain, clone 1, bisulfited, ABBS primer (A.M. library prep)

Organism:: Escherichia coli

Source name:: Bacterial cells

Platform:: GPL21222
Series:: GSE180796

Download data: BW

Sample

Accession:: GSM5471123

ID:: 305471123

SRA Run Selector

Select item 3054711228.

E. coli, K12 strain, clone 2, bisulfited, ABBS primer

Organism:: Escherichia coli

Source name:: Bacterial cells

Platform:: GPL21222
Series:: GSE180796

Download data: BW

Sample

Accession:: GSM5471122

ID:: 305471122

SRA Run Selector

Select item 3054711219.

E. coli, K12 strain, clone 2, bisulfited, WGBS primer

Organism:: Escherichia coli

Source name:: Bacterial cells

Platform:: GPL21222
Series:: GSE180796

Download data: BW

Sample

Accession:: GSM5471121

ID:: 305471121

SRA Run Selector

Select item 30547112010.

E. coli, K12 strain, clone 2, untreated, ABBS primer

Organism:: Escherichia coli

Source name:: Bacterial cells

Platform:: GPL21222
Series:: GSE180796

Download data: BW

Sample

Accession:: GSM5471120

ID:: 305471120

SRA Run Selector

Select item 30547111911.

E. coli, K12 strain, clone 2, untreated, WGBS primer

Organism:: Escherichia coli

Source name:: Bacterial cells

Platform:: GPL21222
Series:: GSE180796

Download data: BW

Sample

Accession:: GSM5471119

ID:: 305471119

SRA Run Selector

Select item 30547111812.

E. coli, K12 strain, clone 1, bisulfited, ABBS primer

Organism:: Escherichia coli

Source name:: Bacterial cells

Platform:: GPL21222
Series:: GSE180796

Download data: BW

Sample

Accession:: GSM5471118

ID:: 305471118

SRA Run Selector

Select item 30547111713.

E. coli, K12 strain, clone 1, bisulfited, WGBS primer

Organism:: Escherichia coli

Source name:: Bacterial cells

Platform:: GPL21222
Series:: GSE180796

Download data: BW

Sample

Accession:: GSM5471117

ID:: 305471117

SRA Run Selector

Select item 30547111614.

E. coli, K12 strain, clone 1, untreated, ABBS primer

Organism:: Escherichia coli

Source name:: Bacterial cells

Platform:: GPL21222
Series:: GSE180796

Download data: BW

Sample

Accession:: GSM5471116

ID:: 305471116

SRA Run Selector

Select item 30547111515.

E. coli, K12 strain, clone 1, untreated, WGBS primer

Organism:: Escherichia coli

Source name:: Bacterial cells

Platform:: GPL21222
Series:: GSE180796

Download data: BW

Sample

Accession:: GSM5471115

ID:: 305471115

SRA Run Selector

Select item 30547112716.

K562, ABBS experiment (A.M. library prep)

Organism:: Homo sapiens

Source name:: human erythroleukemic cell line

Platform:: GPL18573
Series:: GSE180796

Download data: BW

Sample

Accession:: GSM5471127

ID:: 305471127

SRA Run Selector

Select item 30547112617.

K562, ABBS experiment

Organism:: Homo sapiens

Source name:: human erythroleukemic cell line

Platform:: GPL18573
Series:: GSE180796

Download data: BEDGRAPH, BW

Sample

Accession:: GSM5471126

ID:: 305471126

SRA Run Selector

Select item 30547112518.

K562, WGBS experiment

Organism:: Homo sapiens

Source name:: human erythroleukemic cell line

Platform:: GPL18573
Series:: GSE180796

Download data: BEDGRAPH, BW

Sample

Accession:: GSM5471125

ID:: 305471125

SRA Run Selector

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