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Items: 1 to 20 of 29

1.

Sox9 directs divergent epigenomic states in brain tumor subtypes (ChIP-Seq)

(Submitter supplied) The goal of this study was to profile active H3K27ac marks between autochthonous mouse models of high-grade glioma (HGG) and ependymoma (EPN). Furthermore, with the objective of how transcription factor Sox9 affect H3K27ac states in these two models, we also profiled H3K27ac status between HGG and EPN after Sox9 overexpression (Sox9-GOF) or deletion (Sox9-LOF) in each of these models. In addition, we extended our studies to evaluate both H3K27ac and Sox9 states in human HGG and mouse EPN derived tumor cells.
Organism:
Homo sapiens; Mus musculus
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platforms:
GPL19057 GPL21697 GPL21626
25 Samples
Download data: BW
Series
Accession:
GSE202960
ID:
200202960

2.

NextSeq 550 (Homo sapiens)

Organism:
Homo sapiens
1264 Series
33985 Samples
Download data
Platform
Accession:
GPL21697
ID:
100021697

3.

NextSeq 550 (Mus musculus)

Organism:
Mus musculus
1253 Series
54737 Samples
Download data
Platform
Accession:
GPL21626
ID:
100021626

4.

Illumina NextSeq 500 (Mus musculus)

Organism:
Mus musculus
9656 Series
283304 Samples
Download data
Platform
Accession:
GPL19057
ID:
100019057

5.

human HGG, ChIP-Sox9

Organism:
Homo sapiens
Source name:
human HGG tumor tissue
Platform:
GPL21697
Series:
GSE202960 GSE202961
Download data
Sample
Accession:
GSM6139253
ID:
306139253

SRA Run Selector

6.

human HGG, Input2

Organism:
Homo sapiens
Source name:
human HGG tumor tissue
Platform:
GPL21697
Series:
GSE202960 GSE202961
Download data
Sample
Accession:
GSM6139252
ID:
306139252

SRA Run Selector

7.

human HGG, ChIP-H3K27ac

Organism:
Homo sapiens
Source name:
human HGG tumor tissue
Platform:
GPL21697
Series:
GSE202960 GSE202961
Download data
Sample
Accession:
GSM6139251
ID:
306139251

SRA Run Selector

8.

human HGG, Input1

Organism:
Homo sapiens
Source name:
human HGG tumor tissue
Platform:
GPL21697
Series:
GSE202960 GSE202961
Download data
Sample
Accession:
GSM6139250
ID:
306139250

SRA Run Selector

9.

mouse EPN cells, ChIP-Sox9

Organism:
Mus musculus
Source name:
derived from Rela fusion EPN
Platform:
GPL19057
Series:
GSE202960 GSE202961
Download data
Sample
Accession:
GSM6139254
ID:
306139254

SRA Run Selector

10.

mouse EPN, Sox9-GOF, ChIP-H3K27ac, rep2

Organism:
Mus musculus
Source name:
mouse EPN tumor tissue
Platform:
GPL21626
Series:
GSE202960 GSE202961
Download data
Sample
Accession:
GSM6139249
ID:
306139249

SRA Run Selector

11.

mouse EPN, Sox9-GOF, Input, rep2

Organism:
Mus musculus
Source name:
mouse EPN tumor tissue
Platform:
GPL21626
Series:
GSE202960 GSE202961
Download data
Sample
Accession:
GSM6139248
ID:
306139248

SRA Run Selector

12.

mouse EPN, Sox9-GOF, ChIP-H3K27ac, rep1

Organism:
Mus musculus
Source name:
mouse EPN tumor tissue
Platform:
GPL21626
Series:
GSE202960 GSE202961
Download data
Sample
Accession:
GSM6139247
ID:
306139247

SRA Run Selector

13.

mouse EPN, Sox9-GOF, Input, rep1

Organism:
Mus musculus
Source name:
mouse EPN tumor tissue
Platform:
GPL21626
Series:
GSE202960 GSE202961
Download data
Sample
Accession:
GSM6139246
ID:
306139246

SRA Run Selector

14.

mouse HGG, Sox9-GOF, ChIP-H3K27ac, rep2

Organism:
Mus musculus
Source name:
mouse HGG tumor tissue
Platform:
GPL21626
Series:
GSE202960 GSE202961
Download data
Sample
Accession:
GSM6139245
ID:
306139245

SRA Run Selector

15.

mouse HGG, Sox9-GOF, Input, rep2

Organism:
Mus musculus
Source name:
mouse HGG tumor tissue
Platform:
GPL21626
Series:
GSE202960 GSE202961
Download data
Sample
Accession:
GSM6139244
ID:
306139244

SRA Run Selector

16.

mouse HGG, Sox9-GOF, ChIP-H3K27ac, rep1

Organism:
Mus musculus
Source name:
mouse HGG tumor tissue
Platform:
GPL21626
Series:
GSE202960 GSE202961
Download data
Sample
Accession:
GSM6139243
ID:
306139243

SRA Run Selector

17.

mouse HGG, Sox9-GOF, Input, rep1

Organism:
Mus musculus
Source name:
mouse HGG tumor tissue
Platform:
GPL21626
Series:
GSE202960 GSE202961
Download data
Sample
Accession:
GSM6139242
ID:
306139242

SRA Run Selector

18.

mouse HGG, Sox9-LOF, ChIP-H3K27ac, rep2

Organism:
Mus musculus
Source name:
mouse HGG tumor tissue
Platform:
GPL21626
Series:
GSE202960 GSE202961
Download data
Sample
Accession:
GSM6139241
ID:
306139241

SRA Run Selector

19.

mouse HGG, Sox9-LOF, Input, rep2

Organism:
Mus musculus
Source name:
mouse HGG tumor tissue
Platform:
GPL21626
Series:
GSE202960 GSE202961
Download data
Sample
Accession:
GSM6139240
ID:
306139240

SRA Run Selector

20.

mouse HGG, Sox9-LOF, ChIP-H3K27ac, rep1

Organism:
Mus musculus
Source name:
mouse HGG tumor tissue
Platform:
GPL21626
Series:
GSE202960 GSE202961
Download data
Sample
Accession:
GSM6139239
ID:
306139239

SRA Run Selector

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