GSE222734[Accession] - GEO DataSets - NCBI

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Select item 2002227341.

A DNA adenine demethylase impairs PRC2-mediated repression of genes marked by a specific chromatin signature

(Submitter supplied) The Fe(II)- and α-ketoglutarate-dependent AlkB family dioxygenases are implicated in nucleotide demethylation. AlkB homolog1 (ALKBH1) is shown to demethylate DNA adenine methylation (6mA) preferentially from single-stranded or unpaired DNA, while its demethylase activity and function in the chromatin context are unclear. In this work we found that loss-of-function of the rice ALKBH1 gene led to increased 6mA in R-loop regions of the genome but had a limited effect on the overall 6mA level. more...

Organism:: Oryza sativa Japonica Group

Type:: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL18525
24 Samples

Download data: BROADPEAK, BW, NARROWPEAK, TXT

Series

Accession:: GSE222734

ID:: 200222734

PubMed Full text in PMC Similar studies

Select item 1000185252.

Illumina HiSeq 2500 (Oryza sativa Japonica Group)

Organism:: Oryza sativa Japonica Group

31 Series
358 Samples

Platform

Accession:: GPL18525

ID:: 100018525

Select item 3069296333.

Organism:: Oryza sativa Japonica Group

Source name:: seedling

Platform:: GPL18525
Series:: GSE222734

Download data: BW

Sample

Accession:: GSM6929633

ID:: 306929633

SRA Run Selector

Select item 3069296324.

Organism:: Oryza sativa Japonica Group

Source name:: seedling

Platform:: GPL18525
Series:: GSE222734

Download data: BW

Sample

Accession:: GSM6929632

ID:: 306929632

SRA Run Selector

Select item 3069296315.

alkbh1-Anti-ALKBH1-2

Organism:: Oryza sativa Japonica Group

Source name:: seedling

Platform:: GPL18525
Series:: GSE222734

Download data: BROADPEAK, BW

Sample

Accession:: GSM6929631

ID:: 306929631

SRA Run Selector

Select item 3069296306.

alkbh1-Anti-ALKBH1-1

Organism:: Oryza sativa Japonica Group

Source name:: seedling

Platform:: GPL18525
Series:: GSE222734

Download data: BROADPEAK, BW

Sample

Accession:: GSM6929630

ID:: 306929630

SRA Run Selector

Select item 3069296297.

Organism:: Oryza sativa Japonica Group

Source name:: seedling

Platform:: GPL18525
Series:: GSE222734

Download data: BW, NARROWPEAK

Sample

Accession:: GSM6929629

ID:: 306929629

SRA Run Selector

Select item 3069296288.

Organism:: Oryza sativa Japonica Group

Source name:: seedling

Platform:: GPL18525
Series:: GSE222734

Download data: BW, NARROWPEAK

Sample

Accession:: GSM6929628

ID:: 306929628

SRA Run Selector

Select item 3069296279.

NIP-Anti-ALKBH1-2

Organism:: Oryza sativa Japonica Group

Source name:: seedling

Platform:: GPL18525
Series:: GSE222734

Download data: BROADPEAK, BW

Sample

Accession:: GSM6929627

ID:: 306929627

SRA Run Selector

Select item 30692962610.

NIP-Anti-ALKBH1-1

Organism:: Oryza sativa Japonica Group

Source name:: seedling

Platform:: GPL18525
Series:: GSE222734

Download data: BROADPEAK, BW

Sample

Accession:: GSM6929626

ID:: 306929626

SRA Run Selector

Select item 30692962511.

alkbh1-6mA-Input

Organism:: Oryza sativa Japonica Group

Source name:: seedling

Platform:: GPL18525
Series:: GSE222734

Download data: BW

Sample

Accession:: GSM6929625

ID:: 306929625

SRA Run Selector

Select item 30692962412.

Organism:: Oryza sativa Japonica Group

Source name:: seedling

Platform:: GPL18525
Series:: GSE222734

Download data: BW, NARROWPEAK

Sample

Accession:: GSM6929624

ID:: 306929624

SRA Run Selector

Select item 30692962313.

Organism:: Oryza sativa Japonica Group

Source name:: seedling

Platform:: GPL18525
Series:: GSE222734

Download data: BW, NARROWPEAK

Sample

Accession:: GSM6929623

ID:: 306929623

SRA Run Selector

Select item 30692962214.

Organism:: Oryza sativa Japonica Group

Source name:: seedling

Platform:: GPL18525
Series:: GSE222734

Download data: BW

Sample

Accession:: GSM6929622

ID:: 306929622

SRA Run Selector

Select item 30692962115.

Organism:: Oryza sativa Japonica Group

Source name:: seedling

Platform:: GPL18525
Series:: GSE222734

Download data: BW, NARROWPEAK

Sample

Accession:: GSM6929621

ID:: 306929621

SRA Run Selector

Select item 30692962016.

Organism:: Oryza sativa Japonica Group

Source name:: seedling

Platform:: GPL18525
Series:: GSE222734

Download data: BW, NARROWPEAK

Sample

Accession:: GSM6929620

ID:: 306929620

SRA Run Selector

Select item 30692961917.

alkbh1-H3K27me3-2

Organism:: Oryza sativa Japonica Group

Source name:: seedling

Platform:: GPL18525
Series:: GSE222734

Download data: BROADPEAK, BW

Sample

Accession:: GSM6929619

ID:: 306929619

SRA Run Selector

Select item 30692961818.

alkbh1-H3K27me3-1

Organism:: Oryza sativa Japonica Group

Source name:: seedling

Platform:: GPL18525
Series:: GSE222734

Download data: BROADPEAK, BW

Sample

Accession:: GSM6929618

ID:: 306929618

SRA Run Selector

Select item 30692961719.

Organism:: Oryza sativa Japonica Group

Source name:: seedling

Platform:: GPL18525
Series:: GSE222734

Download data: BROADPEAK, BW

Sample

Accession:: GSM6929617

ID:: 306929617

SRA Run Selector

Select item 30692961620.

Organism:: Oryza sativa Japonica Group

Source name:: seedling

Platform:: GPL18525
Series:: GSE222734

Download data: BROADPEAK, BW

Sample

Accession:: GSM6929616

ID:: 306929616

SRA Run Selector

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