GEO DataSets

(Submitter supplied) This is a large series human Duchenne muscular dystrophy patient muscle biopsies, in specific age groups, using all available Affymetrix arrays (including a custom MuscleChip produced by the Hoffman lab). Both mixed groups of patients (5 patient biopsies per group) and individual biopsies were done. Hypothesis: That the progression of DMD can be understood in terms of muscle molecular remodeling. Keywords: other

Organism:

Homo sapiens

Type:

Expression profiling by array

Datasets:

GDS214 GDS262 GDS264 GDS265 GDS270

7 related Platforms

57 Samples

Download data: CEL

Examination of muscle biopsies from Duchenne muscular dystrophy patients and normal subjects of various age groups. Both mixed groups of patients (5 patient biopsies per group) and individual biopsies analyzed.

Organism:

Homo sapiens

Type:

Expression profiling by array, count, 2 age, 2 disease state sets

Platform:

GPL92

Series:

GSE465

4 Samples

Download data: CEL

Examination of muscle biopsies from Duchenne muscular dystrophy patients and normal subjects of various age groups. Both mixed groups of patients (5 patient biopsies per group) and individual biopsies analyzed.

Organism:

Homo sapiens

Type:

Expression profiling by array, count, 2 age, 2 disease state sets

Platform:

GPL95

Series:

GSE465

5 Samples

Download data: CEL

Examination of muscle biopsies from Duchenne muscular dystrophy patients and normal subjects of various age groups. Both mixed groups of patients (5 patient biopsies per group) and individual biopsies analyzed.

Organism:

Homo sapiens

Type:

Expression profiling by array, count, 2 age, 2 disease state sets

Platform:

GPL94

Series:

GSE465

5 Samples

Download data: CEL

Examination of muscle biopsies from Duchenne muscular dystrophy patients and normal subjects of various age groups. Both mixed groups of patients (5 patient biopsies per group) and individual biopsies analyzed.

Organism:

Homo sapiens

Type:

Expression profiling by array, count, 4 age, 2 disease state sets

Platform:

GPL91

Series:

GSE465

7 Samples

Download data: CEL

Examination of muscle biopsies from Duchenne muscular dystrophy patients and normal subjects of various age groups. Both mixed groups of patients (5 patient biopsies per group) and individual biopsies analyzed.

Organism:

Homo sapiens

Type:

Expression profiling by array, count, 4 age, 2 disease state sets

Platform:

GPL246

Series:

GSE465

30 Samples

Download data: CEL

(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 08, 2012: annotation table updated with netaffx build 32 June 27, 2016: annotation table updated with netaffx build 35 Protocol: see manufacturer's web site Based on this UniGene build and associated annotations, the HG-U95Av2 array represents approximately 10,000 full-length genes. more...

Organism:

Homo sapiens

99 DataSets

302 Series

6446 Samples

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(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/projects/geo/info/geo_affy.html The Human Genome U95 (HG-U95) Set, consisting of five GeneChip arrays, contains almost 63,000 probe sets interrogating approximately 54,000 clusters derived from the UniGene database (Build 95). Keywords = high density oligonucleotide array July 08, 2016: annotation table updated with netaffx build 35 Protocol: see manufacturer's web site

Organism:

Homo sapiens

20 DataSets

59 Series

1095 Samples

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(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 21, 2012: annotation table updated with netaffx build 32 Protocol: see manufacturer's web site The Human Genome U95 (HG-U95) Set, consisting of five GeneChip arrays, contains almost 63,000 probe sets interrogating approximately 54,000 clusters derived from the UniGene database (Build 95). more...

Organism:

Homo sapiens

6 DataSets

15 Series

505 Samples

Download data

(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/projects/geo/info/geo_affy.html June 03, 2009: annotation table updated with netaffx build 28 June 21, 2012: annotation table updated with netaffx build 32 Protocol: see manufacturer's web site The Human Genome U95 (HG-U95) Set, consisting of five GeneChip arrays, contains almost 63,000 probe sets interrogating approximately 54,000 clusters derived from the UniGene database (Build 95). more...

Organism:

Homo sapiens

7 DataSets

15 Series

513 Samples

Download data

(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/projects/geo/info/geo_affy.html The Human Genome U95 (HG-U95) Set, consisting of five GeneChip arrays, contains almost 63,000 probe sets interrogating approximately 54,000 clusters derived from the UniGene database (Build 95). Based on this build and associated annotations, the HG-U95Av2 Array represents approximately 10,000 full-length genes, while arrays B through E represent approximately 50,000 EST clusters. more...

Organism:

Homo sapiens

5 DataSets

8 Series

193 Samples

Download data

(Submitter supplied) Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/projects/geo/info/geo_affy.html The Human Genome U95 (HG-U95) Set, consisting of five GeneChip arrays, contains almost 63,000 probe sets interrogating approximately 54,000 clusters derived from the UniGene database (Build 95). Based on this build and associated annotations, the HG-U95Av2 Array represents approximately 10,000 full-length genes, while arrays B through E represent approximately 50,000 EST clusters. more...

Organism:

Homo sapiens

5 DataSets

8 Series

194 Samples

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(Submitter supplied) MuscleChip containing 4,601 muscle probe sets representing 1150 known genes expressed in muscle, and 2,075 EST clusters from a non-normalized subtracted muscle sequencing project (28,074 EST sequences). This included 460 novel EST clusters, showing no match to previously characterized genes in any database. Each probe set was designed to contain 20-32 25mer oligonucleotides (10-16 paired perfect match and mismatch probe pairs per gene), with each probe evaluated for hybridization kinetics (Tm), and similarity to other sequences. more...

Organism:

Homo sapiens

4 DataSets

4 Series

63 Samples

Download data: CDF