GSE55331[Accession] - GEO DataSets - NCBI

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Items: 4

Select item 2000553311.

Transcriptome wide identification of Dicer binding in human and C. elegans reveals a variety of substrates (small RNA AGO-IP)

(Submitter supplied) Dicer is a deeply conserved endoribonuclease with key functions in small RNA biogenesis. Here we employed PAR-CLIP/iPAR-CLIP to identify direct Dicer binding sites in the transcriptomes of human cells and human. We found hundreds of novel miRNAs and non-canonical Dicer substrates with high sensitivity. Small RNA production depended on structure of the binding site and is globally biased towards the 5' arm of hairpins. more...

Organism:: Homo sapiens

Type:: Other; Non-coding RNA profiling by high throughput sequencing

Platform:: GPL11154
2 Samples

Download data: GFF, TSV, WIG

Series

Accession:: GSE55331

ID:: 200055331

PubMed Similar studies SRA Run Selector

Select item 1000111542.

Illumina HiSeq 2000 (Homo sapiens)

Organism:: Homo sapiens

10376 Series
179876 Samples

Platform

Accession:: GPL11154

ID:: 100011154

Select item 3013343313.

FLAG:AGO3 loaded small RNA

Organism:: Homo sapiens

Source name:: cell culture

Platform:: GPL11154
Series:: GSE55331 GSE55333

Download data: TSV

Sample

Accession:: GSM1334331

ID:: 301334331

SRA Run Selector

Select item 3013343304.

FLAG:AGO2 loaded small RNA

Organism:: Homo sapiens

Source name:: cell culture

Platform:: GPL11154
Series:: GSE55331 GSE55333

Download data: TSV

Sample

Accession:: GSM1334330

ID:: 301334330

SRA Run Selector

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