GSM1000564[Accession] - GEO DataSets

Select item 2000494171.

The conserved organization of the human and mouse transcriptomes

(Submitter supplied) We characterized by RNA-seq the transcriptional profiles of a large and heterogeneous collection of mouse tissues, augmenting the mouse transcriptome with thousands of novel transcript candidates. Comparison with transcriptome profiles obtained in human cell lines reveals substantial conservation of transcriptional programs, and uncovers a distinct class of genes with levels of expression across cell types and species, that have been constrained early in vertebrate evolution. more...

Organism:: Mus musculus; Homo sapiens

Type:: Expression profiling by high throughput sequencing

4 related Platforms
64 Samples

Download data: BAM, BEDRNAELEMENTS, BIGWIG, GFF, GTF, PDF

Series

Accession:: GSE49417

ID:: 200049417

PubMed Full text in PMC Similar studies

Select item 2000498472.

A comparative encyclopedia of DNA elements in the mouse genome

(Submitter supplied) The laboratory mouse shares the majority of its protein-coding genes with humans, making it the premier model organism in biomedical research, yet the two mammals differ in significant ways. To gain greater insights into both shared and species-specific transcriptional and cellular regulatory programs in the mouse, the Mouse ENCODE Consortium has mapped transcription, DNase I hypersensitivity, transcription factor binding, chromatin modifications and replication domains throughout the mouse genome in diverse cell and tissue types. more...

Organism:: Mus musculus

Type:: Expression profiling by high throughput sequencing; Genome variation profiling by genome tiling array; Genome binding/occupancy profiling by high throughput sequencing

8 related Platforms
588 Samples

Download data: BAM, BEDRNAELEMENTS, BIGWIG, BROADPEAK, NARROWPEAK, PAIR

Series

Accession:: GSE49847

ID:: 200049847

PubMed Full text in PMC Similar studies Analyze with GEO2R

Select item 2000360253.

Long RNA-seq from ENCODE/Cold Spring Harbor Lab

(Submitter supplied) This data was generated by ENCODE. If you have questions about the data, contact the submitting laboratory directly (Carrie Davis mailto:davisc@cshl.edu (experimental), Roderic Guigo mailto:rguigo@imim.es and lab (data processing) and Tom Gingeras mailto:gingeras@cshl.edu (primary investigator)). If you have questions about the Genome Browser track associated with this data, contact ENCODE (mailto:genome@soe.ucsc.edu). more...