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GEO DataSets

Functional Genomics Studies

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Items: 3

Select item 2001483681.

Sequence logic at enhancers governs a dual mechanism of endodermal organ fate induction by FOXA pioneer factors

(Submitter supplied) FOXA pioneer transcription factors (TFs) associate with primed enhancers in endodermal organ precursors. Using a human stem cell model of pancreas differentiation, we here discover that only a subset of pancreatic enhancers is FOXA-primed, whereas the majority is unprimed and engages FOXA upon lineage induction. Primed enhancers are enriched for signal-dependent TF motifs and harbor abundant and strong FOXA motifs. more...

Organism:: Homo sapiens

Type:: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing

Platforms:: GPL24676 GPL20301
107 Samples

Download data: BIGWIG, MTX, TSV

Series

Accession:: GSE148368

ID:: 200148368

PubMed Full text in PMC Similar studies Analyze with GEO2R SRA Run Selector

Select item 1000203012.

Illumina HiSeq 4000 (Homo sapiens)

Organism:: Homo sapiens

8086 Series
186063 Samples

Platform

Accession:: GPL20301

ID:: 100020301

Select item 3055079293.

Cyt49_GT.ChIP-Seq.GATA4.replicate.1

Organism:: Homo sapiens

Source name:: Cyt49 Control

Platform:: GPL20301
Series:: GSE148368

Download data: BIGWIG

Sample

Accession:: GSM5507929

ID:: 305507929

SRA Run Selector

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GSM5507929[Accession] (3)
GEO DataSets
Taxonomy Links for Nucleotide (Select 160948611) (1)
Taxonomy
PREDICTED: Rattus norvegicus Cd2 (cytoplasmic tail) binding protein 2 (Cd2bp2), ...
PREDICTED: Rattus norvegicus Cd2 (cytoplasmic tail) binding protein 2 (Cd2bp2), transcript variant X2, mRNA
gi|2678865125|ref|XM_063286241.1|

Nucleotide
Gene Links for GEO Profiles (Select 125878397) (1)
Gene
SAR1A secretion associated Ras related GTPase 1A [Homo sapiens]
SAR1A secretion associated Ras related GTPase 1A [Homo sapiens]
Gene ID:56681

Gene

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