GSM586815[Accession] - GEO DataSets

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Items: 3

Select item 2000237781.

Nucleosome depletion in Saccharomyces cerevisiae terminator

(Submitter supplied) H3 ChIP and input DNA were hybridized to Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array Genome-wide mapping of nucleosomes generated by micrococcal nuclease (MNase) suggests that yeast promoter and terminator regions are very depleted of nucleosomes, predominantly because their DNA sequences intrinsically disfavor nucleosome formation. However, MNase has strong DNA sequence specificity that favors cleavage at promoters and terminators and accounts for some of the correlation between occupancy patterns of nucleosomes assembled in vivo and in vitro. more...

Organism:: Saccharomyces cerevisiae

Type:: Genome binding/occupancy profiling by genome tiling array

Platform:: GPL7250
4 Samples

Download data: CEL, PDF, WIG

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Accession:: GSE23778

ID:: 200023778

PubMed Full text in PMC Similar studies

Select item 1000072502.

[Sc03b_MR] Affymetrix GeneChip S. cerevisiae Tiling 1.0R Array

(Submitter supplied) Tiling array submissions are typically submitted to GEO using the GEOarchive method described at http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/projects/geo/info/geo_affy.html BPMAP and other files can be downloaded from the Affymetrix Web site below. Protocol: Designed for identifying novel transcripts, mapping sites of protein/DNA interaction in chromatin immunoprecipitation (ChIP) experiments, and other whole-genome experiments Single array comprised of over 3.2 million perfect match/mismatch probe pairs tiled through the complete Saccharomyces cerevisiae genome. more...