U.S. flag

An official website of the United States government

Format
Items per page
Sort by

Send to:

Choose Destination

Search results

Items: 1 to 20 of 25

1.

The hagfish genome and the evolution of vertebrates

(Submitter supplied) As the only surviving lineages of jawless fishes, hagfishes and lampreys provide a critical window into early vertebrate evolution. Here, we investigate the complex history, timing, and functional role of genome-wide duplications in vertebrates in the light of a chromosome-scale genome of the brown hagfish Eptatretus atami. Using robust chromosome-scale (paralogon-based) phylogenetic methods, we confirm the monophyly of cyclostomes, document an auto-tetraploidization (1RV) that predated the origin of crown group vertebrates ~517 Mya, and establish the timing of subsequent independent duplications in the gnathostome and cyclostome lineages. more...
Organism:
Eptatretus atami
Type:
Expression profiling by high throughput sequencing
Platform:
GPL33352
13 Samples
Download data: TSV
Series
Accession:
GSE230176
ID:
200230176
2.

Hagfish genome elucidates vertebrate whole genome duplication events and their evolutionary consequences

(Submitter supplied) Polyploidy or whole genome duplication (WGD) is a major event that drastically reshapes genome architecture and is often assumed to be causally associated with organismal innovations and radiations. The 2R Hypothesis suggests that two WGD events (1R and 2R) occurred during early vertebrate evolution. However, the timing of the 2R event relative to the divergence of gnathostomes (jawed vertebrates) and cyclostomes (jawless hagfishes and lampreys) is unresolved and whether these WGD events underlie vertebrate phenotypic diversification remains elusive. more...
Organism:
Eptatretus burgeri
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL33928
8 Samples
Download data: BED, BW
Series
Accession:
GSE247552
ID:
200247552
3.

Illumina HiSeq 4000 (Eptatretus burgeri)

Organism:
Eptatretus burgeri
1 Series
8 Samples
Download data
Platform
Accession:
GPL33928
ID:
100033928
4.

Illumina HiSeq 2000 (Eptatretus atami)

Organism:
Eptatretus atami
1 Series
13 Samples
Download data
Platform
Accession:
GPL33352
ID:
100033352
5.

SM31_S13: Skeletal muscle tongue

Organism:
Eptatretus atami
Source name:
Skeletal muscle tongue
Platform:
GPL33352
Series:
GSE230176
Download data
Sample
Accession:
GSM7191261
ID:
307191261
6.

SK1_S6: Skin

Organism:
Eptatretus atami
Source name:
Skin
Platform:
GPL33352
Series:
GSE230176
Download data
Sample
Accession:
GSM7191260
ID:
307191260
7.

SG1_S9: Slime gland

Organism:
Eptatretus atami
Source name:
Slime gland
Platform:
GPL33352
Series:
GSE230176
Download data
Sample
Accession:
GSM7191259
ID:
307191259
8.

OV11_S5: ovar

Organism:
Eptatretus atami
Source name:
ovar
Platform:
GPL33352
Series:
GSE230176
Download data
Sample
Accession:
GSM7191258
ID:
307191258
9.

LI1_S3: Liver

Organism:
Eptatretus atami
Source name:
Liver
Platform:
GPL33352
Series:
GSE230176
Download data
Sample
Accession:
GSM7191257
ID:
307191257
10.

KI1_S8: Kidney

Organism:
Eptatretus atami
Source name:
Kidney
Platform:
GPL33352
Series:
GSE230176
Download data
Sample
Accession:
GSM7191256
ID:
307191256
11.

IN1_S12: Intestine

Organism:
Eptatretus atami
Source name:
Intestine
Platform:
GPL33352
Series:
GSE230176
Download data
Sample
Accession:
GSM7191255
ID:
307191255
12.

HE21_S4: Heart3

Organism:
Eptatretus atami
Source name:
Heart3
Platform:
GPL33352
Series:
GSE230176
Download data
Sample
Accession:
GSM7191254
ID:
307191254
13.

GI1_S7: Gills

Organism:
Eptatretus atami
Source name:
Gills
Platform:
GPL33352
Series:
GSE230176
Download data
Sample
Accession:
GSM7191253
ID:
307191253
14.

GB1_S10: Gall bladder

Organism:
Eptatretus atami
Source name:
Gall bladder
Platform:
GPL33352
Series:
GSE230176
Download data
Sample
Accession:
GSM7191252
ID:
307191252
15.

BR1_S1: Brain

Organism:
Eptatretus atami
Source name:
Brain
Platform:
GPL33352
Series:
GSE230176
Download data
Sample
Accession:
GSM7191251
ID:
307191251
16.

BC1_S11: Blood cells

Organism:
Eptatretus atami
Source name:
Blood cells
Platform:
GPL33352
Series:
GSE230176
Download data
Sample
Accession:
GSM7191250
ID:
307191250
17.

AT1_S2: Adipose tissue

Organism:
Eptatretus atami
Source name:
Adipose tissue
Platform:
GPL33352
Series:
GSE230176
Download data
Sample
Accession:
GSM7191249
ID:
307191249
18.

Posterior part, stage 53, rep2

Organism:
Eptatretus burgeri
Source name:
Posterior half of whole embryos
Platform:
GPL33928
Series:
GSE247552
Download data: BW
Sample
Accession:
GSM7892806
ID:
307892806
19.

Posterior part, stage 53, rep1

Organism:
Eptatretus burgeri
Source name:
Posterior half of whole embryos
Platform:
GPL33928
Series:
GSE247552
Download data: BW
Sample
Accession:
GSM7892805
ID:
307892805
20.

Anterior part, stage 53, rep2

Organism:
Eptatretus burgeri
Source name:
Anterior half of whole embryos
Platform:
GPL33928
Series:
GSE247552
Download data: BW
Sample
Accession:
GSM7892804
ID:
307892804
Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

db=gds|term=txid117565[Organism:exp]|query=1|qty=3|blobid=MCID_661baa3de3fccf2937884373|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
   Taxonomic Groups  [List]
Tree placeholder
    Top Organisms  [Tree]

Find related data

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center