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Items: 16

1.

Dual bioaugmentation with Desulfitobacterium hafniense Y51 and redox-trained fermenting communities for decontamination of PCE polluted river sediment: a microcosm study

(Submitter supplied) The physiology of D. hafniense strain Y51 under close to natural conditions were examined: D. hafniense Y51 was subjected to a variety of limiting conditions (carbon or electron acceptor) or ammonium deprivation, in chemostat. Its physiology was assessed by transcriptomic and proteomic analyses and compared to that in batch culture. Electron donor/acceptor-limited growth conditions cause a switch to alternative metabolic pathways allowing the organism with a capacity to survive in polluted environments and with a readiness to use alternative electron acceptors such as PCE; (ii) nitrogen limitation induces nitrogen fixation implying a robustness vis-a-vis ammonia shortage; (iii) limiting conditions trigger a general stress response that should enable the organism to cope with even more environmental constraints.
Organism:
Desulfitobacterium hafniense; Desulfitobacterium hafniense Y51
Type:
Expression profiling by array
Platform:
GPL24288
4 Samples
Download data: TXT
Series
Accession:
GSE115548
ID:
200115548
2.

Metabolic flexibility of a prospective bioremediator: Desulfitobacterium hafniense Y51 challenged in chemostats

(Submitter supplied) The physiology of D. hafniense strain Y51 under close to natural conditions were examined: D. hafniense Y51 was subjected to a variety of limiting conditions (carbon or electron acceptor) or ammonium deprivation, in chemostat. Its physiology was assessed by transcriptomic and proteomic analyses and compared to that in batch culture. Electron donor/acceptor-limited growth conditions cause a switch to alternative metabolic pathways allowing the organism with a capacity to survive in polluted environments and with a readiness to use alternative electron acceptors such as PCE; (ii) nitrogen limitation induces nitrogen fixation implying a robustness vis-a-vis ammonia shortage; (iii) limiting conditions trigger a general stress response that should enable the organism to cope with even more environmental constraints.
Organism:
Desulfitobacterium hafniense; Desulfitobacterium hafniense Y51
Type:
Expression profiling by array
Platform:
GPL24288
10 Samples
Download data: TXT
Series
Accession:
GSE107146
ID:
200107146
3.

river sediment replicate 1

Organism:
Desulfitobacterium hafniense Y51
Source name:
river sediment
Platform:
GPL24288
Series:
GSE115548
Download data: TXT
Sample
Accession:
GSM3181848
ID:
303181848
4.

batch culture with 10ml pure hexadecane, replicate 3

Organism:
Desulfitobacterium hafniense Y51
Source name:
batch culture with 10ml pure hexadecane
Platform:
GPL24288
Series:
GSE115548
Download data: TXT
Sample
Accession:
GSM3181847
ID:
303181847
5.

batch culture with 10ml pure hexadecane, replicate 2

Organism:
Desulfitobacterium hafniense Y51
Source name:
batch culture with 10ml pure hexadecane
Platform:
GPL24288
Series:
GSE115548
Download data: TXT
Sample
Accession:
GSM3181846
ID:
303181846
6.

batch culture with 10ml pure hexadecane, replicate 1

Organism:
Desulfitobacterium hafniense Y51
Source name:
batch culture with 10ml pure hexadecane
Platform:
GPL24288
Series:
GSE115548
Download data: TXT
Sample
Accession:
GSM3181845
ID:
303181845
7.

fumarate-limited chemostat, replicate 3

Organism:
Desulfitobacterium hafniense Y51
Source name:
fumarate-limited chemostat, replicate 3
Platform:
GPL24288
Series:
GSE107146
Download data: TXT
Sample
Accession:
GSM2861702
ID:
302861702
8.

fumarate-limited chemostat, replicate 2

Organism:
Desulfitobacterium hafniense Y51
Source name:
fumarate-limited chemostat, replicate 2
Platform:
GPL24288
Series:
GSE107146
Download data: TXT
Sample
Accession:
GSM2861701
ID:
302861701
9.

batch culture, replicate 2

Organism:
Desulfitobacterium hafniense Y51
Source name:
batch culture, replicate 2
Platform:
GPL24288
Series:
GSE107146
Download data: TXT
Sample
Accession:
GSM2861700
ID:
302861700
10.

batch culture, replicate 1

Organism:
Desulfitobacterium hafniense Y51
Source name:
batch culture, replicate 1
Platform:
GPL24288
Series:
GSE107146
Download data: TXT
Sample
Accession:
GSM2861699
ID:
302861699
11.

ammonium-deprived, replicate 3

Organism:
Desulfitobacterium hafniense Y51
Source name:
ammonium-deprived, replicate 3
Platform:
GPL24288
Series:
GSE107146
Download data: TXT
Sample
Accession:
GSM2861698
ID:
302861698
12.

lactate-limited chemostat, replicate 2

Organism:
Desulfitobacterium hafniense Y51
Source name:
lactate-limited chemostat, replicate 2
Platform:
GPL24288
Series:
GSE107146
Download data: TXT
Sample
Accession:
GSM2861697
ID:
302861697
13.

lactate-limited chemostat, replicate 1

Organism:
Desulfitobacterium hafniense Y51
Source name:
lactate-limited chemostat, replicate 1
Platform:
GPL24288
Series:
GSE107146
Download data: TXT
Sample
Accession:
GSM2861696
ID:
302861696
14.

ammonium-deprived, replicate 2

Organism:
Desulfitobacterium hafniense Y51
Source name:
ammonium-deprived, replicate 2
Platform:
GPL24288
Series:
GSE107146
Download data: TXT
Sample
Accession:
GSM2861695
ID:
302861695
15.

ammonium-deprived, replicate 1

Organism:
Desulfitobacterium hafniense Y51
Source name:
ammonium-deprived, replicate 1
Platform:
GPL24288
Series:
GSE107146
Download data: TXT
Sample
Accession:
GSM2861694
ID:
302861694
16.

fumarate-limited chemostat, replicate 1

Organism:
Desulfitobacterium hafniense Y51
Source name:
fumarate-limited chemostat, replicate 1
Platform:
GPL24288
Series:
GSE107146
Download data: TXT
Sample
Accession:
GSM2861693
ID:
302861693
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db=gds|term=txid138119[Organism:noexp]|query=1|qty=3|blobid=MCID_61efe45766dbb977db5622e8|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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