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Items: 1 to 20 of 225

1.

Comparison of RNA localization during oogenesis within Acipenser ruthenus and Xenopus laevis

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Xenopus laevis; Acipenser ruthenus
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL21248 GPL26119
94 Samples
Download data
Series
Accession:
GSE211416
ID:
200211416
2.

Comparison of RNA localization during oogenesis within Acipenser ruthenus and Xenopus laevis [Acipenser ruthenus]

(Submitter supplied) In this study we analyzed the spatial and temporal localization of maternal transcripts during oogenesis in Acipenser ruthenus. The occurrence of transcript asymmetry in A. ruthenus has been described at a global level only in matured eggs. However not much is known about the asymmetry during oogenesis. In this study we assessed the temporal establishment of the transcript localization at a global level for A. more...
Organism:
Acipenser ruthenus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL26119
35 Samples
Download data: FASTA, XLSX
Series
Accession:
GSE211412
ID:
200211412
3.

Transcriptomic analysis of sturgeon embryos in response to chemically induced DNA damage

(Submitter supplied) In this study we show that the exposure to genotoxicants (10 nM camptothecin and 20 µM Olaparib) affects embryo development in a stage-dependent manner with early stages being the most sensitive to DNA damage. The transcriptomic and proteomic patterns changed significantly after exposure to genotoxicants compared to the control. Camptothecin and Olaparib downregulated metabolic pathways and developmental processes. more...
Organism:
Acipenser ruthenus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL26119
16 Samples
Download data: CSV
Series
Accession:
GSE190524
ID:
200190524
4.

Effects of different fat source diets on the transcriptome of brain, liver and spleen in Yangze sturgeon

(Submitter supplied) Nutrition is an important part of the protection process of Yangze sturgeon. This study tested the transcriptome levels of brain, liver and spleen after feeding different fat source diets to Yangze sturgeon.
Organism:
Acipenser dabryanus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL27135
12 Samples
Download data: FASTA, TXT
Series
Accession:
GSE136237
ID:
200136237
5.

Diverse CGG binding proteins across eukaryotes produced by independent domestications of hAT transposons

(Submitter supplied) The human transcription factor (TF) CGGBP1 (“CGG Binding Protein”) is conserved only in amniotes, and is believed to derive from the zf-BED and Hermes transposase DNA-binding domains (DBDs) of a hAT DNA transposon. Here, we examine the DNA binding preferences of a wide variety of metazoan CGGBP1-like TFs with this bipartite domain using PBM experiments. The derived motifs are available at ...
Organism:
Acyrthosiphon pisum; Salmo salar; Fundulus heteroclitus; Sparus aurata; Chrysemys picta; Austrofundulus limnaeus; Anabas testudineus; Amphiprion percula; Salarias fasciatus; Locusta migratoria; Crocodylus porosus; Homo sapiens; Rhodnius prolixus; Rhipicephalus appendiculatus; Kryptolebias marmoratus; Nematostella vectensis; Acanthochromis polyacanthus; Hippocampus comes; Hofstenia miamia; Aedes aegypti; Culex quinquefasciatus; Latimeria chalumnae; Cyprinus carpio; synthetic construct; Hucho hucho; Amphiprion ocellaris; Labeo rohita; Mola mola; Sphaeramia orbicularis; Anabarilius grahami; Petromyzon marinus; Acipenser ruthenus; Gallus gallus; Erpetoichthys calabaricus; Rhizophagus irregularis; Paramormyrops kingsleyae
Type:
Other
Platform:
GPL11260
258 Samples
Download data: TXT
Series
Accession:
GSE157085
ID:
200157085
6.

Transcriptome profiles of sturgeon lateral line electroreceptor and mechanoreceptor during regeneration

(Submitter supplied) The larvae were treated with 200 μM neomycin to deplete the hair cells in neuromast and ampullary organ. Two kinds of sensory epithelia at the ventral side of head were separated at 12 hour-post treatment (hpt) and 24 hpt, respectively. Mechano- and electro- sensory epithelia before neomycin treating were collected respectively as control (untreated).The epithelia near but without two kinds of sensors (EPs) were also collected. more...
Organism:
Acipenser baerii
Type:
Expression profiling by high throughput sequencing
Platform:
GPL28574
14 Samples
Download data: FASTA, TXT
Series
Accession:
GSE151096
ID:
200151096
7.

RNA_Seq analysis of localization along animal-vegetal axis of Acipenser ruthenus

(Submitter supplied) We performed cryosectioning of oocytes along the animal-vegetal axis (first developmental axis, section A (first animal) to section E (last vegetal), followed by RNA-Seq to determine the localization profiles of coding and noncoding RNAs. The method allowed for a complete view on RNA localization. We found that nearly all RNAs are localized, but only a small percentage is actively transported during oogenesis.
Organism:
Acipenser ruthenus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL26119
15 Samples
Download data: FASTA, TXT
Series
Accession:
GSE125819
ID:
200125819
8.

Sex-biased expression of small RNA by microarray in critically endangered Amur sturgeon

(Submitter supplied) In this study, we utilized the microfluidics chip technology on the gonads of Amur sturgeon to identifiy gender-specific sRNAs. The probes of all miRNAs about 2751 published in fish and our novel miRNAs from sturgeon were chosed in the microarray experiment.
Organism:
Acipenser schrenckii
Type:
Non-coding RNA profiling by array
Platform:
GPL22094
6 Samples
Download data: GPR
Series
Accession:
GSE83840
ID:
200083840
9.

Transcriptome of Chinese sturgeon (Acipenser sinensis) from the hypothalamic-pituitary-gonad axis in two sex development stages

(Submitter supplied) Here, the HPG axis transcriptomes of A. sinensis were sequenced using Illumina HiSeq 2000 and 4000 platforms. A total of 271.19 Gb filtered data from 45 samples belonging to 15 individuals (six individuals in stage I, six males and three females in stage II) were obtained, and 74.50% of 121,952 assembled unigenes were annotated to the non-redundant (NR), Swiss-Prot, Kyoto Encyclopedia of Genes and Genomes (KEGG), Cluster of Orthologous Groups of proteins (COG), InterPro, Gene Ontology (GO) and NT databases. more...
Organism:
Acipenser sinensis
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL26201 GPL24766
45 Samples
Download data: TXT
Series
Accession:
GSE126616
ID:
200126616
10.

Comparative study of gene expression during early vertebrate development between Xenopus laevis and Sturgeon

(Submitter supplied) Sturgeon and Xenopus is estimated to be separate by about 400 My of evolution. We have collected data on temporal expression profile in Sturgeon in order to compare the level and timing of expression for homologous pairs of genes, commonly referred to as hetero-metry and hetero-chrony. Following up our previously published research on similar comparison between two species of Xenopus separated by estimated 50 My, we are asking whether patterns of expression and signaling cascades of two key developmental periods - gastrulation and neurulation are implemented via conserved molecular basis. more...
Organism:
Acipenser sturio
Type:
Expression profiling by high throughput sequencing
Platform:
GPL21053
24 Samples
Download data: FA, TXT
Series
Accession:
GSE74249
ID:
200074249
11.

Transcriptome profiling reveals cleft palate-related genes in Chinese sturgeon (Acipenser sinensis)

(Submitter supplied) The Chinese sturgeon (Acipenser sinensis) is anadromous fish distributed in Yangtze River and East China Sea. In this study, we reported cleft-palate Chinese sturgeons in artificial population for the first time. In order to explore the genetic basis of palate malformation in A. sinensis, Illumina RNA-seq technology was used to analyze the transcriptome data of normal and cleft-palate individuals in farmed Chinese sturgeons. more...
Organism:
Acipenser sinensis
Type:
Expression profiling by high throughput sequencing
Platform:
GPL24766
6 Samples
Download data: FA, TXT
Series
Accession:
GSE112292
ID:
200112292
12.

Insights into electrosensory organ development, physiology and evolution from a lateral line organ-enriched transcriptome

(Submitter supplied) The anamniote lateral line system, comprising mechanosensory neuromasts and electrosensory ampullary organs, is a useful model for investigating the developmental and evolutionary diversification of different organs and cell types. Zebrafish neuromast development is increasingly well understood, but neither zebrafish nor Xenopus is electroreceptive and our molecular understanding of ampullary organ development is rudimentary. more...
Organism:
Polyodon spathula
Type:
Expression profiling by high throughput sequencing
Platform:
GPL22801
6 Samples
Download data: FASTA, TXT, XLSX
Series
Accession:
GSE92470
ID:
200092470
13.

High conservation in transcriptomic and proteomic response of white sturgeon to equipotent concentrations of 2,3,7,8-TCDD, PCB 77, and benzo[a]pyrene

(Submitter supplied) Adverse effects associated with exposure to dioxin-like compounds (DLCs) are mediated primarily through activation of the aryl hydrocarbon receptor (AHR). However, little is known about the cascades of events that link activation of the AHR to apical adverse effects. Therefore, this study used high-throughput, next-generation molecular tools to investigate similarities and differences in whole transcriptome and whole proteome responses to equipotent concentrations of three agonists of the AHR, 2,3,7,8-TCDD, PCB 77, and benzo[a]pyrene, in livers of a non-model fish, the white sturgeon (Acipenser transmontanus). more...
Organism:
Acipenser transmontanus
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL21658 GPL21657
8 Samples
Download data: CSV, TXT
Series
Accession:
GSE79624
ID:
200079624
14.

Sex-biased expression of miRNAs by microarray in critically endangered Amur sturgeon

(Submitter supplied) In this study, we utilized the microfluidics chip technology on the gonads of Amur sturgeon to identifiy gender-specific miRNAs. The probes of all miRNAs about 663 published in fish and our novel miRNAs from sturgeon were chosed in the microarray experiment.
Organism:
Acipenser sturio; Acipenser schrenckii
Type:
Non-coding RNA profiling by array
Platform:
GPL19362
2 Samples
Download data: TXT
Series
Accession:
GSE62787
ID:
200062787
15.

Tissue expression profiling of miRNAs in Amur sturgeon (Acipenser schrenckii)

(Submitter supplied) Microarray expriments were performed in 5 tissues of Amur sturgeon, included liver, spleen, brain ,muscle and heart.
Organism:
Acipenser schrenckii; Acipenser sturio
Type:
Non-coding RNA profiling by array
Platform:
GPL18611
5 Samples
Download data: TXT
Series
Accession:
GSE57102
ID:
200057102
16.

Illumina HiSeq 1500 (Acipenser baerii)

Organism:
Acipenser baerii
1 Series
14 Samples
Download data
Platform
Accession:
GPL28574
ID:
100028574
17.

Illumina HiSeq 2500 (Acipenser dabryanus)

Organism:
Acipenser dabryanus
1 Series
12 Samples
Download data
Platform
Accession:
GPL27135
ID:
100027135
18.

CustomArray Amur sturgeon 12K miRNA array

(Submitter supplied) http://www.customarrayinc.com/index.htm
Organism:
Acipenser schrenckii
1 Series
6 Samples
Download data
Platform
Accession:
GPL22094
ID:
100022094
19.

Illumina HiSeq 4000 (Acipenser sinensis)

Organism:
Acipenser sinensis
1 Series
6 Samples
Download data
Platform
Accession:
GPL26201
ID:
100026201
20.

Illumina NextSeq 500 (Acipenser ruthenus)

Organism:
Acipenser ruthenus
4 Series
66 Samples
Download data
Platform
Accession:
GPL26119
ID:
100026119
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