GEO DataSets

(Submitter supplied) RNA-seq was performed on T. maritima wild type, three glucose evolved cultures, and three glycerol adapted cultures. Wild type and glucose evolved strains were grown on glucose minimal media and glycerol evolved cultures were grown on glycerol minimal media. All samples were harvested in exponential phase.

Organism:

Thermotoga maritima MSB8

Type:

Expression profiling by high throughput sequencing

Platform:

GPL19399

14 Samples

Download data: DIFF

(Submitter supplied) In this study, we combined a subsystem-based comparative genomic approach with experimental validation to reconstruct the metabolic and regulatory networks of carbohydrate utilization in 11 complete genomes from the Thermotogales order.

Organism:

Thermotoga maritima MSB8

Type:

Expression profiling by genome tiling array

Platform:

GPL17235

19 Samples

Download data: CALLS, PAIR

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Thermotoga maritima MSB8

Type:

Expression profiling by genome tiling array; Expression profiling by high throughput sequencing

Platforms:

GPL15460 GPL15474

20 Samples

Download data: CALLS, GFF, PAIR, TXT

(Submitter supplied) Investigation of transcripts (boundaries, expression level, etc.) using strand specific, paired-end RNA sequencing for T. maritima under multiple growth conditions. The new genome annotation has been approved by Genbank [CP004077, pending release of the manuscript].

Organism:

Thermotoga maritima MSB8

Type:

Expression profiling by high throughput sequencing

Platform:

GPL15474

4 Samples

Download data: TXT

(Submitter supplied) Investigation of 5' transcripts using strand specific sequencing for T. maritima under logphase, maltose minimal media growth conditions

Organism:

Thermotoga maritima MSB8

Type:

Expression profiling by high throughput sequencing

Platform:

GPL15474

2 Samples

Download data: GFF

(Submitter supplied) Investigation of transcripts (boundary, level, etc.) across the entire T. maritima genome in mulitple growth conditions, including logphase, late exponential, heat shock and hydrogen inhibited conditions. The new genome annotation has been approved by Genbank [CP004077, pending release of the manuscript].

Organism:

Thermotoga maritima MSB8

Type:

Expression profiling by genome tiling array

Platform:

GPL15460

14 Samples

Download data: CALLS, PAIR

(Submitter supplied) An eight chip study using total RNA recovered from separate wild-type cultures of Thermotoga maritima at mid-log with 3 different minimal sugar media.

Organism:

Thermotoga maritima MSB8

Type:

Expression profiling by genome tiling array

Platform:

GPL13446

8 Samples

Download data: CALLS, PAIR, TXT

(Submitter supplied) NimbleGen tiling array for Thermotoga maritima. #native array description file = Tmar_Design_v2.ndf #native array description file = Tmar_Design_v2.ngd Protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.

Organism:

Thermotoga maritima MSB8

1 Series

19 Samples

Download data: NCD, NDF, POS

(Submitter supplied) NimbleGen tiling array for Thermotoga maritima. Protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.

Organism:

Thermotoga maritima MSB8

2 Series

14 Samples

Download data: NCD, NDF, POS

(Submitter supplied) NimbleGen tiling array for Thermotoga maritima MSB8 (ATCC: 43589). High-density four-plex oligonucleotide tiling arrays consisting of 4 x 71,548 probes of variable length spaced across the whole Thermotoga maritima genome. Native array description file: Tmar_Design_v2.ndf Native array description file: Tmar_Design_v2.ngd Protocol: High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. more...

Organism:

Thermotoga maritima MSB8

1 Series

8 Samples

Download data: NCD, NDF, POS, TXT