GEO DataSets

(Submitter supplied) Suspended cell studies were performed to document whole-genome transcriptional profiles as a function of Cr(VI) reduction under different electron accepting conditions. Cell suspension studies were performed in 250 mL serum bottles for two conditions: 1) under anoxic condition with lactate as carbon source and nitrate as electron acceptor, and 2) under aerobic condition with lactate as carbon source and oxygen as electron acceptor. more...

Organism:

Paracoccus denitrificans

Type:

Expression profiling by high throughput sequencing

Platform:

GPL30492

2 Samples

Download data: TXT

(Submitter supplied) We report the application of transcriptome sequencing technology in florfenicol interfering with denitrification by Paracoccus denitrificans. More than 30 billion bases of sequences were obtained by sequencing analysis. We found 433 differentially expressed genes, of which 292 genes were down-regulated and 141 genes were up-regulated, respectively. Importantly, most of the denitrification genes were suppressed, which further led to the enrichment of key metabolic pathways. more...

Organism:

Paracoccus denitrificans

Type:

Expression profiling by high throughput sequencing

Platform:

GPL29732

6 Samples

Download data: TXT

(Submitter supplied) Transcriptional profiling of Paracoccus denitrificans PD1222 wild type incubated in continuous culture (continuous culture (CSTR)) in minimal media with aerobic or anaerobic conditions. The goal was to define the core respiratory genes.

Organism:

Paracoccus denitrificans; Paracoccus denitrificans PD1222

Type:

Expression profiling by array

Platform:

GPL17412

6 Samples

Download data: GPR

(Submitter supplied) We report here the RNA seq results of sRNA enriched Paracoccus denitrificans grown under three different N2O levels (high N2O reffered to as CuL/ low N2O reffered to as CuH/ Low N2O aerobic reffered to as CuH O2)

Organism:

Paracoccus denitrificans

Type:

Expression profiling by high throughput sequencing

Platform:

GPL22301

3 Samples

Download data: WIG

(Submitter supplied) Transcriptional profiling of Paracoccus denitrificans PD1222 wild type grown to mid-exponential phase in minimal media with either 13 uM (Cu-H) or 0.5 uM (Cu-L) Cu regimes. The goal was to define the effects of Cu-limitation on denitrification genes

Organism:

Paracoccus denitrificans PD1222; Paracoccus denitrificans

Type:

Expression profiling by array

Platform:

GPL17412

6 Samples

Download data: GPR

(Submitter supplied) probes for ORFs from Paracoccus denitrificans PD1222. Design was aimed to have tiled probes of around 60 bp, every 100 bp throughout the genome, where possible" The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface)." To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions." Protocol: see manufacturer's web site at http://www.agilent.com/

Organism:

Paracoccus denitrificans

2 Series

12 Samples

Download data: GAL