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Items: 1 to 20 of 82

1.

RNAi mediates post-transcriptional repression of gene expression in fission yeast Schizosaccharomyces pombe

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Schizosaccharomyces pombe 972h-; Schizosaccharomyces pombe
Type:
Expression profiling by genome tiling array; Non-coding RNA profiling by high throughput sequencing
Platforms:
GPL7715 GPL18187
10 Samples
Download data: CEL, TXT
Series
Accession:
GSE54195
ID:
200054195
2.

RNAi mediates post-transcriptional repression of gene expression in fission yeast Schizosaccharomyces pombe [Illumina Genome Analyzer]

(Submitter supplied) RNA interference (RNAi) is a gene silencing mechanism conserved from fungi to mammals. Small interfering RNAs are products and mediators of the RNAi pathway and act as specificity factors in recruiting effector complexes. The Schizosaccharomyces pombe genome encodes one of each of the core RNAi proteins, Dicer, Argonaute and RNA-dependent RNA polymerase (dcr1, ago1, rdp1). Even though the function of RNAi in heterochromatin assembly in S. more...
Organism:
Schizosaccharomyces pombe 972h-
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL18187
1 Sample
Download data: TXT
Series
Accession:
GSE54194
ID:
200054194
3.

RNAi mediates post-transcriptional repression of gene expression in fission yeast Schizosaccharomyces pombe [Affymetrix]

(Submitter supplied) RNA interference (RNAi) is a gene silencing mechanism conserved from fungi to mammals. Small interfering RNAs are products and mediators of the RNAi pathway and act as specificity factors in recruiting effector complexes. The Schizosaccharomyces pombe genome encodes one of each of the core RNAi proteins, Dicer, Argonaute and RNA-dependent RNA polymerase (dcr1, ago1, rdp1). Even though the function of RNAi in heterochromatin assembly in S. more...
Organism:
Schizosaccharomyces pombe; Schizosaccharomyces pombe 972h-
Type:
Expression profiling by genome tiling array
Platform:
GPL7715
9 Samples
Download data: BAR, CEL
Series
Accession:
GSE54190
ID:
200054190
4.

Genome-Wide Characterization of the Phosphate Starvation Response in Schizosaccharomyces pombe

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Schizosaccharomyces pombe; Schizosaccharomyces pombe 972h-
Type:
Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by array
Platforms:
GPL15830 GPL15827
47 Samples
Download data: GPR, WIG
Series
Accession:
GSE39499
ID:
200039499
5.

Genome-Wide Characterization of the Phosphate Starvation Response in Schizosaccharomyces pombe [ChIP-Seq data]

(Submitter supplied) Inorganic phosphate is an essential nutrient required by organisms for growth. During phosphate starvation, Saccharomyces cerevisiae activates the phosphate signal transduction (PHO) pathway leading to the expression of the secreted acid phosphatase, PHO5. The fission yeast, Schizosaccharomyces pombe, regulates expression of the ScPHO5 homolog (pho1+) via a non-orthologous PHO pathway. The genes induced by phosphate limitation and the molecular mechanism by which the genetically identified positive (pho7+) and negative (csk1+) regulators function are not known. more...
Organism:
Schizosaccharomyces pombe 972h-
Type:
Genome binding/occupancy profiling by high throughput sequencing
Platform:
GPL15830
5 Samples
Download data: WIG
Series
Accession:
GSE39498
ID:
200039498
6.

Genome-Wide Characterization of the Phosphate Starvation Response in Schizosaccharomyces pombe [gene expression data]

(Submitter supplied) Inorganic phosphate is an essential nutrient required by organisms for growth. During phosphate starvation, Saccharomyces cerevisiae activates the phosphate signal transduction (PHO) pathway leading to the expression of the secreted acid phosphatase, PHO5. The fission yeast, Schizosaccharomyces pombe, regulates expression of the ScPHO5 homolog (pho1+) via a non-orthologous PHO pathway. The genes induced by phosphate limitation and the molecular mechanism by which the genetically identified positive (pho7+) and negative (csk1+) regulators function are not known. more...
Organism:
Schizosaccharomyces pombe; Schizosaccharomyces pombe 972h-
Type:
Expression profiling by array
Platform:
GPL15827
42 Samples
Download data: GPR
Series
Accession:
GSE39478
ID:
200039478
7.

Ofd2+/-hypoxia

(Submitter supplied) Investigation of mRNA expression level changes in S. pombeOfd2 (SPAP8A3.02c) deletion strain compared to wild-type strain at both normal oxygen (normoxia) and low oxygen (hypoxia) growth conditions.
Organism:
Schizosaccharomyces pombe; Schizosaccharomyces pombe 972h-
Type:
Expression profiling by array
Platform:
GPL10720
4 Samples
Download data: TXT
Series
Accession:
GSE31236
ID:
200031236
8.

Analysis of DNA strand-specific differential expression with high density tiling microarrays

(Submitter supplied) DNA microarray technology allows the analysis of genome structure and dynamics at genome-wide scale. Expression microarrays (EMA) contain probes for annotated open reading frames (ORF) and are widely used for the analysis of differential gene expression. By contrast, tiling microarrays (TMA) have a much higher probe density and provide unbiased genome-wide coverage. The purpose of this study was to develop a protocol that would take advantage of the high resolution of TMAs for quantitative measurement of DNA strand-specific differential expression of annotated and non-annotated transcripts. more...
Organism:
Schizosaccharomyces pombe; Schizosaccharomyces pombe 972h-
Type:
Expression profiling by array; Expression profiling by genome tiling array
Platforms:
GPL9671 GPL9672
8 Samples
Download data: CEL
Series
Accession:
GSE19020
ID:
200019020
9.

Fission yeast Jmj2 reverses histone H3 lysine 4 tri-methylation

(Submitter supplied) We compared the genomic localization of H3K4me3 in wild type and jmj2- S. pombe. Keywords: mutant vs wild-type
Organism:
Schizosaccharomyces pombe; Schizosaccharomyces pombe 972h-
Type:
Genome binding/occupancy profiling by genome tiling array
Platform:
GPL4749
2 Samples
Download data
Series
Accession:
GSE8175
ID:
200008175
10.

Localization and mechanism of S. pombe histone demethylases

(Submitter supplied) We profiled the genomic localization of two histone demethylases, LSD1 and LSD2 using ChIP-on-chip. Deletions in LSD2 are lethal but not in LSD1, so we examined effect of an lsd1 deletion on genomewide expression levels and localization patterns of H3me2K4 and H3me2K9 relative to wild-type. Keywords: mutant vs wild-type
Organism:
Schizosaccharomyces pombe; Schizosaccharomyces pombe 972h-
Type:
Expression profiling by genome tiling array; Genome binding/occupancy profiling by genome tiling array
Platform:
GPL4749
7 Samples
Download data: PAIR
Series
Accession:
GSE6753
ID:
200006753
11.

Illumina Genome Analyzer (Schizosaccharomyces pombe 972h-)

Organism:
Schizosaccharomyces pombe 972h-
2 Series
1 Sample
Download data
Platform
Accession:
GPL18187
ID:
100018187
12.

Illumina HiSeq 2000 (Schizosaccharomyces pombe 972h-)

Organism:
Schizosaccharomyces pombe 972h-
2 Series
5 Samples
Download data
Platform
Accession:
GPL15830
ID:
100015830
13.

CSHL S. pombe Genomic Tiling Microarray

(Submitter supplied) S. pombe genomic tiling microarray using using NimbleGen custom platform (DesignID=2005-04-18_Spombe_ChIP). The array is based on the 02-SEP-2004 version of the genome first described by Wood et al (2002). Protocol: http://www.nimblegen.com/products/chip/index.html
Organism:
Schizosaccharomyces pombe 972h-
2 Series
9 Samples
Download data
Platform
Accession:
GPL4749
ID:
100004749
14.

wt_sRNA

Organism:
Schizosaccharomyces pombe 972h-
Source name:
sRNA from wild type S. pombe
Platform:
GPL18187
Series:
GSE54194 GSE54195
Download data: TXT
Sample
Accession:
GSM1309661
ID:
301309661
15.

RNA_rdp1_3

Organism:
Schizosaccharomyces pombe 972h-
Source name:
RNA from rdp1Δ S. pombe, actinomycin D
Platform:
GPL7715
Series:
GSE54190 GSE54195
Download data: CEL
Sample
Accession:
GSM1309508
ID:
301309508
16.

RNA_rdp1_2

Organism:
Schizosaccharomyces pombe 972h-
Source name:
RNA from rdp1Δ S. pombe, actinomycin D
Platform:
GPL7715
Series:
GSE54190 GSE54195
Download data: CEL
Sample
Accession:
GSM1309507
ID:
301309507
17.

RNA_rdp1_1

Organism:
Schizosaccharomyces pombe 972h-
Source name:
RNA from rdp1Δ S. pombe, actinomycin D
Platform:
GPL7715
Series:
GSE54190 GSE54195
Download data: CEL
Sample
Accession:
GSM1309506
ID:
301309506
18.

RNA_dcr1_3

Organism:
Schizosaccharomyces pombe 972h-
Source name:
RNA from dcr1Δ S. pombe, actinomycin D
Platform:
GPL7715
Series:
GSE54190 GSE54195
Download data: CEL
Sample
Accession:
GSM1309505
ID:
301309505
19.

RNA_dcr1_2

Organism:
Schizosaccharomyces pombe 972h-
Source name:
RNA from dcr1Δ S. pombe, actinomycin D
Platform:
GPL7715
Series:
GSE54190 GSE54195
Download data: CEL
Sample
Accession:
GSM1309504
ID:
301309504
20.

RNA_dcr1_1

Organism:
Schizosaccharomyces pombe 972h-
Source name:
RNA from dcr1Δ S. pombe, actinomycin D
Platform:
GPL7715
Series:
GSE54190 GSE54195
Download data: CEL
Sample
Accession:
GSM1309503
ID:
301309503
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