txid300852[Organism:noexp] - GEO DataSets - NCBI

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Select item 2002158121.

T. thermophilus infected with phage P23-45

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other

Platforms:: GPL32746 GPL32745
23 Samples

Download data: BEDGRAPH, TXT

Series

Accession:: GSE215812

ID:: 200215812

Select item 2002158112.

ONT-cappable-seq for P23-45 bacteriophage 5 min post-infection

(Submitter supplied) We performed the long-read RNA sequencing technique ONT-cappable-seq on RNA samples of T. thermophilus infected with phage P23-45 5 minutes post-infection. Using this approach, we obtained the primary transcriptome at the early infection stage and sequenced it in full-length. Based on this data, we were able to identify viral transcription start sites and termination sites and uncover distinct promoter motifs.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by high throughput sequencing; Other

Platform:: GPL32746
2 Samples

Download data: TXT

Series

Accession:: GSE215811

ID:: 200215811

Select item 2002158103.

Chromatin immunoprecipitation DNA-sequencing (ChIP-seq) for RNA-polymerases encoded by P23-45 bacteriophage

(Submitter supplied) By doing ChIP-seq with antibodies against two P23-45 RNA polymerases gp64 and gp96 we showed that both RNA polymerases interact with the phage genome at the early stage of infection. Gp96 interacts with pre-early P23-45 genes, while gp64 interacts with pre-early, early and some middle-stage genes.

Organism:: Thermus thermophilus HB8

Type:: Genome binding/occupancy profiling by high throughput sequencing

Platform:: GPL32745
21 Samples

Download data: BEDGRAPH

Series

Accession:: GSE215810

ID:: 200215810

Select item 2000660304.

mRNA expression in RNase deletion mutants of Thermus thermophilus HB8

(Submitter supplied) We analyzed the expression profile of protein kinase and protein phosphatase deletion strains of Thermus thermophils HB8. Keywords: cell type comparison

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
59 Samples

Download data: CEL

Series

Accession:: GSE66030

ID:: 200066030

Analyze with GEO2R

Select item 2000527925.

mRNA expression in RNase deletion mutants of Thermus thermophilus HB8

(Submitter supplied) We analyzed the expression profile of RNase deletion strains of Thermus thermophils HB8. Keywords: cell type comparison

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
81 Samples

Download data: CEL

Series

Accession:: GSE52792

ID:: 200052792

Analyze with GEO2R

Select item 2000314636.

Differential expression analysis between litR (TTHB100) deletion mutant and wild-type of Thermus thermophilus HB8 under the dark condition.

(Submitter supplied) We observed the expression profile of the total mRNA of litR (TTHB100) deletion mutant of T. thermophilus HB8 strain grown in a rich (TM) medium at 60 °C under the dark condition compared with that of wild-type.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
6 Samples

Download data: CEL

Series

Accession:: GSE31463

ID:: 200031463

Analyze with GEO2R

Select item 2000339857.

Expression data from Thermus thermophilus HB8 wild type and TTHA1559 disrupted

(Submitter supplied) We observed the expression profile of the total mRNA of wild-type and TTHA1559 disrupted Thermus thermophilus HB8 strain at 70°C.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL4902
6 Samples

Download data: CEL, CHP

Series

Accession:: GSE33985

ID:: 200033985

Analyze with GEO2R

Select item 2000468688.

Differential expression analysis of T. thermophilus HB8 wild-type strain in response to addition of silicic acid and removal of iron.

(Submitter supplied) We observed the expression profile of the total mRNA in Thermus thermophilus HB8 wild-type strain at 60 min after the addition of silicic acid and removal of iron.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL4902
9 Samples

Download data: CEL, CHP

Series

Accession:: GSE46868

ID:: 200046868

Analyze with GEO2R

Select item 2000369099.

Comparative expression analysis between PfmR (TTHB023) deletion mutant and wild-type of Thermus thermophilus HB8

(Submitter supplied) We observed the expression profile of the total mRNA of PfmR (TTHB023) deletion mutant of Thermus thermophilus HB8 strain grown in a rich (TT) medium at 70°C compared with that of wild type.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
10 Samples

Download data: CEL

Series

Accession:: GSE36909

ID:: 200036909

Analyze with GEO2R

Select item 20003688410.

Expression profile of wild-type Thermus thermophilus HB8 strain cultured in TT medium for 6 h, reproduced in 2011

(Submitter supplied) We observed the expression profile of the total mRNA of the wild-type strain grown in a rich medium at 70 deg-C for 360 min.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
4 Samples

Download data: CEL

Series

Accession:: GSE36884

ID:: 200036884

Analyze with GEO2R

Select item 20003688311.

Expression profile of wild-type Thermus thermophilus HB8 strain cultured in TT medium for 6 h, reproduced in 2010

(Submitter supplied) We observed the expression profile of the total mRNA of the wild-type strain grown in a rich medium at 70 deg-C for 360 min.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
3 Samples

Download data: CEL

Series

Accession:: GSE36883

ID:: 200036883

Analyze with GEO2R

Select item 20003688112.

Expression profile of PfmR (TTHB023)-deficient Thermus thermophilus HB8 strain

(Submitter supplied) In order to find function of PfmR protein from T. thermophilus HB8, we observed the expression profile of the total mRNA of the PfmR-deficient strain grown in a rich medium at 70°C for 360 min.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
3 Samples

Download data: CEL

Series

Accession:: GSE36881

ID:: 200036881

Analyze with GEO2R

Select item 20003691213.

SuperSeries for the study of expression analysis of the PfmR (TTHB023) in T. thermophilus HB8

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
40 Samples

Download data: CEL

Series

Accession:: GSE36912

ID:: 200036912

Analyze with GEO2R

Select item 20002781814.

mRNA expression under alkylating condition in wild-type strain and ttha1564 deletion mutant of Thermus thermophilus HB8

(Submitter supplied) We analyzed the expression profile of wild-type strain and ttha1564 deletion mutant strain of Thermus thermophils HB8 under alkylating condition. In wild type strain, 107 genes and 96 genes were over 2-fold up- and under 0.5-fold down-regulated by alkylation, respectively. In ttha1564 deletion mutant, 35 genes and 12 genes were over 2-fold up- and under 0.5-fold down-regulated by alkylation, respectively. more...

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
12 Samples

Download data: CEL

Series

Accession:: GSE27818

ID:: 200027818

Analyze with GEO2R

Select item 20002256715.

Transcription profile of T. thermophilus HB8 strain lacking mutS, mutL, or mutS2 gene

(Submitter supplied) We analyzed the expression profile of mutS, mutL, or mutS2 deletion mutant strain of Thermus thermophils HB8 during the exponential growth phase. When compared with wild type using t-test (P < 0.01), 8, 111, and 18 genes were over 2-fold up-regulated in mutS, mutL, and mutS2-lacking strains, respectively. Keywords: cell type comparison This SuperSeries is composed of the SubSeries listed below.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL4902
12 Samples

Download data: CEL

Series

Accession:: GSE22567

ID:: 200022567

Analyze with GEO2R

Select item 20002235016.

mRNA expression in mutS deletion mutant of Thermus thermophilus HB8

(Submitter supplied) We analyzed the expression profile of mutS deletion mutant strain of Thermus thermophils HB8 during the exponential growth phase. Keywords: cell type comparison

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL4902
6 Samples

Download data: CEL

Series

Accession:: GSE22350

ID:: 200022350

Analyze with GEO2R

Select item 20002234917.

mRNA expression in mutS2 deletion mutant of Thermus thermophilus HB8

(Submitter supplied) We analyzed the expression profile of mutS2 deletion mutant strain of Thermus thermophils HB8 during the exponential growth phase. Keywords: cell type comparison

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL4902
6 Samples

Download data: CEL

Series

Accession:: GSE22349

ID:: 200022349

Analyze with GEO2R

Select item 20002234818.

mRNA expression in mutL deletion mutant of Thermus thermophilus HB8

(Submitter supplied) We analyzed the expression profile of mutL deletion mutant strain of Thermus thermophils HB8 during the exponential growth phase. Keywords: cell type comparison

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL4902
6 Samples

Download data: CEL

Series

Accession:: GSE22348

ID:: 200022348

Analyze with GEO2R

Select item 20002418419.

Comparative expression analysis between TTHA0101-deficient mutant and wild-type of Thermus thermophilus HB8

(Submitter supplied) We observed the expression profile of the total mRNA of TTHA0101 deletion mutant of Thermus thermophilus HB8 strain grown in a rich (TT) medium at 70°C compared with that of wild type.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
7 Samples

Download data: CEL

Series

Accession:: GSE24184

ID:: 200024184

Analyze with GEO2R

Select item 20002187520.

SuperSeries for the study of expression pattern analysis of Thermus thermophilus HB8

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:: Thermus thermophilus HB8

Type:: Expression profiling by array

Platform:: GPL9209
306 Samples

Download data: CEL

Series

Accession:: GSE21875

ID:: 200021875

Analyze with GEO2R

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