Format
Items per page
Sort by

Send to:

Choose Destination

Search results

Items: 1 to 20 of 319

1.

The Physcomitrium patens egg cell changes the epigenetic program and utilizes homologs of Arabidopsis male genes, including BONOBOs, for cell specification

(Submitter supplied) We used single cell laser-assisted microdissection (LAM) to perform egg cell transcriptome analysis for comparison with available expression profiles of vegetative tissues and male reproductive organs. We observed an overlap in gene activity between bryophyte and angiosperm egg cells, but also clear differences. Strikingly, several processes that are male germline-specific in Arabidopsis are active in the P. more...
Organism:
Physcomitrium patens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL30513
4 Samples
Download data: TXT
Series
Accession:
GSE182112
ID:
200182112
2.

Non-CG methylation is more potent than CG methylation in moss genome regulation

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Physcomitrium patens; Arabidopsis thaliana
Type:
Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing
5 related Platforms
29 Samples
Download data: GFF
Series
Accession:
GSE142054
ID:
200142054
3.

Non-CG methylation is more potent than CG methylation in moss genome regulation [Ppatens RNA-Seq]

(Submitter supplied) Cytosine methylation is commonly targeted to symmetrical CG sites, as well as to non-CGs, such as the symmetrical-CHG and asymmetric-CHH sites in plants (H= A, C or T). Thus far, depletion of CG methylation in plants was associated with ample transcriptional activation of transposons. Here, we profiled transcription in various context specific methylation mutants in the early-diverged plant, Physcomitrella patens. more...
Organism:
Physcomitrium patens
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL17793 GPL27916
20 Samples
Download data: TXT
Series
Accession:
GSE142053
ID:
200142053
4.

Non-CG methylation is more potent than CG methylation in moss genome regulation [Ppatens BS-Seq]

(Submitter supplied) Cytosine methylation is commonly targeted to symmetrical CG sites, as well as to non-CGs, such as the symmetrical-CHG and asymmetric-CHH sites in plants (H= A, C or T). Thus far, depletion of CG methylation in plants was associated with ample transcriptional activation of transposons. Here, we profiled transcription in various context specific methylation mutants in the early-diverged plant, Physcomitrella patens. more...
Organism:
Physcomitrium patens
Type:
Methylation profiling by high throughput sequencing
Platforms:
GPL29161 GPL14798
3 Samples
Download data: GFF
Series
Accession:
GSE142051
ID:
200142051
5.

Two novel PLS-class pentatricopeptide repeat proteins are involved in the group II intron splicing of mitochondrial transcripts in the moss Physcomitrella patens

(Submitter supplied) Pentatricopeptide repeat (PPR) proteins are RNA binding proteins that function in posttranscriptional regulation as gene-specific regulators of RNA metabolism in plant organelles. Plant PPR proteins are divided into four classes: P, PLS, E and DYW. The E- and DYW-class proteins are mainly implicated in RNA editing, whereas most of the P-class proteins predominantly participate in RNA cleavage, splicing and stabilization. more...
Organism:
Physcomitrium patens
Type:
Expression profiling by array
Platform:
GPL25703
4 Samples
Download data: TXT
Series
Accession:
GSE145050
ID:
200145050
6.

Transcriptome analysis

(Submitter supplied) transcriptomic analysis by a high-throughput sequencing platform.
Organism:
Physcomitrium patens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL28239
10 Samples
Download data: TXT, XLSX
Series
Accession:
GSE146607
ID:
200146607
7.

Dynamics of the transcriptome response to heat in the moss, Physcomitrella Patens

(Submitter supplied) The moss Physcomitrella patens was employed to study abiotic stress responses in order to understand the effects of mild (30°C) and strong (37°C) continuous heat stresses from 1h to 24h at a transcriptomic level.
Organism:
Physcomitrium patens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17793
24 Samples
Download data: TXT
Series
Accession:
GSE138467
ID:
200138467
8.

The P-class pentatricopeptide repeat protein binds to the 5’ untranslated and translated regions of chloroplast psbI-ycf12 transcript and is involved in mRNA stability

(Submitter supplied) Chloroplast gene expression is controlled by numerous nuclear-encoded RNA-binding proteins. Among them, pentatricopeptide repeat (PPR) proteins are known to be a key player in posttranscriptional regulation in chloroplasts. However, the functions of many PPR proteins remain unknown. In this study, we characterized the function of a chloroplast-localized P-class PPR protein PpPPR_21 in Physcomitrella patens. more...
Organism:
Physcomitrium patens
Type:
Expression profiling by array
Platform:
GPL25703
4 Samples
Download data: TXT
Series
Accession:
GSE121554
ID:
200121554
9.

RdDM-independent de novo and heterochromatin DNA methylation by plant CMT and DNMT3 orthologs [Bisulfite-Seq]

(Submitter supplied) To properly regulate the genome, cytosine methylation is established by animal DNA methyltransferase 3s (DNMT3s). While altered DNMT3 homologs, DOMAINS REARRANGED METHYLTRANSFERASEs (DRMs), have been shown to establish methylation via the RNA directed DNA methylation (RdDM) pathway, the role of true-plant DNMT3 orthologs remains elusive. Here, we profile de novo (RPS transgene) and genomic methylation in the basal plant, Physcomitrella patens, mutated in each of its PpDNMTs. more...
Organism:
Physcomitrium patens
Type:
Methylation profiling by high throughput sequencing
Platform:
GPL14798
10 Samples
Download data: GFF
Series
Accession:
GSE118153
ID:
200118153
10.

Genome-wide small RNAtranscriptome analysis during dehydration and recovery in gametophores of Physcomitrella patens

(Submitter supplied) Small RNA transcript abundances were analyzed with samples taken from hydrated (HD), moderate dehydration (MDH), desiccated (SDH), partially recovered (PRE) and fully recovered (FRE) gametophores of P. patens by using next generation sequencing. Totally, 147 microRNAs were identified as differentially expressed miRNAs.The results provided insight for exploring the mechanisms of desiccation tolerance and their evolution.
Organism:
Physcomitrium patens
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL14798
10 Samples
Download data: TXT, XLS
Series
Accession:
GSE66589
ID:
200066589
11.

Genome-wide DNA methylation maps during rehydration in gametophores of Physcomitrella patens.

(Submitter supplied) To examine the P. patens genome-wide methylation landscape and assess its functional significance during dehydration, we generated the first single-base resolution genome methylation maps for P. patens gametophores of hydrated (HD), moderate dehydrated (MDH), severe dehydrated (SDH), partially recovered (PRE) and fully recovered (FRE). The overall density of methyl-cytosine was not broadly altered by dehydration and recovery. more...
Organism:
Physcomitrium patens
Type:
Methylation profiling by high throughput sequencing
Platform:
GPL14798
5 Samples
Download data: XLS
Series
Accession:
GSE66485
ID:
200066485
12.

Genome-wide transcriptome analysis during dehydration and recovery in gametophores of Physcomitrella patens

(Submitter supplied) Gene transcript abundances were analyzed with samples taken from hydrated (HD), moderate dehydration (MDH), desiccated (SDH), partially recovered (PRE) and fully recovered (FRE) gametophores of P. patens by using RNA-Seq. Totally, 14686 transcripts were identified as differentially expressed transcripts.The results provided insight for exploring the mechanisms of desiccation tolerance and their evolution.
Organism:
Physcomitrium patens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL14798
15 Samples
Download data: TXT, XLS
Series
Accession:
GSE66467
ID:
200066467
13.

Evaluation of DNA-binding preferences of non-metazoan C2H2 zinc finger proteins by PBM

(Submitter supplied) The largest and most diverse class of eukaryotic transcription factors contain Cys2-His2 zinc fingers (C2H2-ZFs). Here, we have explored the diversity of sequence preferences of C2H2-ZF proteins in non-metazoan organisms using PBM experiments.
Organism:
Physcomitrium patens; Schizophyllum commune; Toxoplasma gondii; Arabidopsis thaliana; Schizosaccharomyces pombe; Histoplasma capsulatum; Puccinia graminis; Rhizopus delemar; Neurospora crassa; synthetic construct; Dictyostelium discoideum; Batrachochytrium dendrobatidis
Type:
Other
Platform:
GPL11260
86 Samples
Download data: TXT
Series
Accession:
GSE73117
ID:
200073117
14.

ppmax2 response to gr24-Strigopath/Physcomitrella patens

(Submitter supplied) 4plex_physco_2014-05 - ppmax2 response to gr24 - How does the Ppmax2 moss mutant respond to Strigolactone (GR24)? - Two moss genotypes are used: WT and the Ppmax2 mutant. Moss tissues are fragmented, then plated on medium (Petri dish with cellophane disks) and cultivated for 3 weeks. Moss tissues are then transfered for 6 hours on acetone-containing medium (control treatment, for WT and Ppmax2) or GR24 (1 microM, in acetone)-containing medium (for Ppmax2). more...
Organism:
Physcomitrium patens
Type:
Expression profiling by array
Platform:
GPL21755
8 Samples
Download data: GPR
Series
Accession:
GSE80578
ID:
200080578
15.

An ABA response regulator unique to basal land plants required for the acquisition of desiccation tolerance

(Submitter supplied) Purpose: The plant hormone abscisic acid (ABA) coordinates responses leading to desiccation tolerance in all land plants. RNA-seq was employed to obtain differential expression data in response to ABA, dehydration and mannitol treatments in wild-type tissue. This was compared against the targeted gene knockout line PpanrKO. The ANR gene encodes a novel ABA regulator identified from ABA non-responsive (anr) mutant screens. more...
Organism:
Physcomitrium patens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL17793
8 Samples
Download data: GFF, TXT
Series
Accession:
GSE72583
ID:
200072583
16.

Gene expression analysis of abscisic acid responsive genes in AR7 mutant

(Submitter supplied) To obtain the gene expression profiles of the moss Physcomitrella patens ABA insensitive mutant AR7, we performed microarray analysis of wildtype plant and AR7 using a custom Physcomitrella oligonucleotide microarray, which carries probes for 33,942 gene models of Physcomitrella genome version 1.1. on a 4 x 44 K Agilent platform.
Organism:
Physcomitrium patens
Type:
Expression profiling by array
Platform:
GPL15514
4 Samples
Download data: GPR
Series
Accession:
GSE68914
ID:
200068914
17.

small RNA-seq of Physcomitrella patens small RNA mutants

(Submitter supplied) To investigate the effects of dcl3,dcl4,mDCL,rdr2,rdr6,nrpd1b, and nrpd1c mutations upon small RNAs in Physcomitrella patens , small RNA-seq was performed.
Organism:
Physcomitrium patens
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL17793
30 Samples
Download data: TXT
Series
Accession:
GSE51419
ID:
200051419
18.

dsRNA-seq of Physcomitrella patens rdr mutants

(Submitter supplied) To investigate the effects of rdr2 and rdr6 mutations upon the strucutred component of the Physcomitrella patens transcriptome, dsRNAseq performed. The accumulation of dsRNAseq reads within known small RNA (microRNA and siRNA) loci was quantified and compared between wild-type and the two mutants.
Organism:
Physcomitrium patens
Type:
Expression profiling by high throughput sequencing
Platform:
GPL9916
3 Samples
Download data: TXT
Series
Accession:
GSE51418
ID:
200051418
19.

small RNA-seq of Physcomitrella patens rdr mutants

(Submitter supplied) To investigate the effects of rdr2 and rdr6 mutations upon small RNAs in Physcomitrella patens , small RNA-seq was performed.
Organism:
Physcomitrium patens
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL9916
3 Samples
Download data: TXT
Series
Accession:
GSE51416
ID:
200051416
20.

Small RNA genes of Physcomitrella patens

(Submitter supplied) Small RNA-seq from 10 day-old wild-type Physcomitrella patens was performed using 5 biological replicates. Replicates were grown in three batches at different times. Batch 1 had one replicate from strain "old WT", Batch 2 had two replicates from strain "old WT", and batch 3 had two replicates from strain "2009 WT". Old WT and 2009 WT were collected from Gransden wood, England; "old" has been in lab cultivation for at least 10 years, while "2009" was more recently collected from the wild (in 2009.)
Organism:
Physcomitrium patens
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL16754
10 Samples
Download data: TXT
Series
Accession:
GSE44900
ID:
200044900
Format
Items per page
Sort by

Send to:

Choose Destination

Supplemental Content

db=gds|term=txid3218[Organism:noexp]|query=1|qty=125|blobid=MCID_61eae657a1424428e06b4949|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
   Taxonomic Groups  [List]
Tree placeholder
    Top Organisms  [Tree]

Find related data

Search details

See more...

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center