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Items: 1 to 20 of 24

1.

tRNA-seq and YAMAT-seq profiling the expressions of tRNA-derived fragments and tRNAs in plants

(Submitter supplied) Here, we apply tRNA-seq and YAMAT-seq to profile the expressions of tRFs and tRNAs in plants. We provide a high-quality expression atlas of tRFs and tRNAs in Arabidopsis and rice, and uncover complex tRF population and the dynamic expressions of tRNA genes in plants.
Organism:
Setaria italica; Zea mays; Sorghum bicolor; Arabidopsis thaliana; Glycine max; Hordeum vulgare; Triticum aestivum
Type:
Non-coding RNA profiling by high throughput sequencing
7 related Platforms
13 Samples
Download data: TXT, XLSX
Series
Accession:
GSE154165
ID:
200154165
2.

DNase-SEQ analysis of whole leaf and bundle sheath tissues in Zea mays, Sorghum bicolor, Setaria italica and Brachypodium distachyon.

(Submitter supplied) Photosynthesis supports life on Earth but the regulatory architecture associated with photosynthesis gene expression is poorly understood. Most crops use either C3 or C4 photosynthesis with the latter allowing significantly higher efficiencies as well as improved water and nitrogen use. Here we use DNAse-SEQ to define >1 million transcription factor binding sites in leaves of grasses that either operate C3 or C4 photosynthesis and that are consistent with significant differences in the modes of gene regulation between the kingdoms of life. more...
Organism:
Brachypodium distachyon; Setaria italica; Zea mays; Sorghum bicolor
Type:
Genome binding/occupancy profiling by high throughput sequencing
4 related Platforms
20 Samples
Download data: BED, TXT
Series
Accession:
GSE97369
ID:
200097369
3.

Transcriptome sequencing of Foxtail millet Setaria italica for different tissues

(Submitter supplied) Transcriptome sequencing of Foxtail millet Setaria italica (Zhang-gu) for different tissues.
Organism:
Setaria italica
Type:
Expression profiling by high throughput sequencing
Platform:
GPL15337
4 Samples
Download data: BEDGRAPH
Series
Accession:
GSE36391
ID:
200036391
4.

High-throughput sequencing of small RNAs in Setaria italica

(Submitter supplied) Small RNAs (21-24 nt) are pivotal regulators of gene expression that guide both transcriptional and post-transcriptional silencing mechanisms in diverse eukaryotes, including most if not all plants. MicroRNAs (miRNAs) and short interfering RNAs (siRNAs) are the two major types, both of which have a demonstrated and important role in plant development, stress responses and pathogen resistance. In this work, we used a deep sequencing approach (Sequencing-By-Synthesis, or SBS) to develop sequence resources of small RNAs from Setaria italica tissues (including leaves, flowers and roots). more...
Organism:
Setaria italica
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL14635
3 Samples
Download data: TXT
Series
Accession:
GSE32468
ID:
200032468
5.

Comparative sequence analysis of plant small RNAs

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Chlamydomonas reinhardtii; Volvox carteri; Picea abies; Cucurbita maxima; Solanum lycopersicum; Sorghum bicolor; Silene latifolia; Panicum virgatum; Chara corallina; Populus trichocarpa; Nicotiana tabacum; Erythranthe guttata; Hordeum vulgare; Triticum aestivum; Zostera marina; Aristolochia fimbriata; Miscanthus x giganteus; Citrus sinensis; Ginkgo biloba; Carica papaya; Capsicum annuum; Lactuca sativa; Zea mays; Amborella trichopoda; Gossypium arboreum; Persea americana; Petunia x hybrida; Solanum tuberosum; Setaria italica; Musa acuminata; Marsilea quadrifolia; Vitis vinifera; Cycas rumphii; Nuphar advena
Type:
Non-coding RNA profiling by high throughput sequencing
34 related Platforms
99 Samples
Download data: TXT
Series
Accession:
GSE28755
ID:
200028755
6.

Illumina HiSeq 4000 (Setaria italica)

Organism:
Setaria italica
1 Series
2 Samples
Download data
Platform
Accession:
GPL28850
ID:
100028850
7.

Illumina NextSeq 500 (Setaria italica)

Organism:
Setaria italica
1 Series
6 Samples
Download data
Platform
Accession:
GPL23255
ID:
100023255
8.

Illumina HiSeq 2000 (Setaria italica)

Organism:
Setaria italica
1 Series
4 Samples
Download data
Platform
Accession:
GPL15337
ID:
100015337
9.

Illumina Genome Analyzer II (Setaria italica)

Organism:
Setaria italica
2 Series
3 Samples
Download data
Platform
Accession:
GPL14635
ID:
100014635
10.

YAMATseq, S.italica seedling

Organism:
Setaria italica
Source name:
S.italica seedling
Platform:
GPL28850
Series:
GSE154165
Download data: TXT
Sample
Accession:
GSM4665293
ID:
304665293
11.

tRNAseq, S.italica seedling

Organism:
Setaria italica
Source name:
S.italica seedling
Platform:
GPL28850
Series:
GSE154165
Download data
Sample
Accession:
GSM4665288
ID:
304665288
12.

Si_nkd

Organism:
Setaria italica
Source name:
Whole leaf
Platform:
GPL23255
Series:
GSE97369
Download data
Sample
Accession:
GSM3590894
ID:
303590894
13.

Si_WL_rep_3

Organism:
Setaria italica
Source name:
Setaria italica seedlings
Platform:
GPL23255
Series:
GSE97369
Download data
Sample
Accession:
GSM2563161
ID:
302563161
14.

Si_WL_rep_2

Organism:
Setaria italica
Source name:
Setaria italica seedlings
Platform:
GPL23255
Series:
GSE97369
Download data
Sample
Accession:
GSM2563160
ID:
302563160
15.

Si_WL_rep_1

Organism:
Setaria italica
Source name:
Setaria italica seedlings
Platform:
GPL23255
Series:
GSE97369
Download data
Sample
Accession:
GSM2563159
ID:
302563159
16.

Si_BS_rep_2

Organism:
Setaria italica
Source name:
Setaria italica seedlings
Platform:
GPL23255
Series:
GSE97369
Download data
Sample
Accession:
GSM2563158
ID:
302563158
17.

Si_BS_rep_1

Organism:
Setaria italica
Source name:
Setaria italica seedlings
Platform:
GPL23255
Series:
GSE97369
Download data
Sample
Accession:
GSM2563157
ID:
302563157
18.

Foxtail millet spica

Organism:
Setaria italica
Source name:
spica (tassel)
Platform:
GPL15337
Series:
GSE36391
Download data: BEDGRAPH
Sample
Accession:
GSM892311
ID:
300892311
19.

Foxtail millet stem

Organism:
Setaria italica
Source name:
stem
Platform:
GPL15337
Series:
GSE36391
Download data: BEDGRAPH
Sample
Accession:
GSM892310
ID:
300892310
20.

Foxtail millet leaf

Organism:
Setaria italica
Source name:
leaf
Platform:
GPL15337
Series:
GSE36391
Download data: BEDGRAPH
Sample
Accession:
GSM892309
ID:
300892309
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db=gds|term=txid4555[Organism:noexp]|query=1|qty=38|blobid=MCID_61e69e871ae3b916a90394e8|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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