GEO DataSets

(Submitter supplied) In plant pathogenic fungi, conditionally dispensable (CD) chromosomes are often associated with virulence, but not viability. Such virulence-associated CD chromosomes carry genes encoding effectors and/or host-specific toxin biosynthesis enzymes, potentially important for determining host specificity. Fusarium oxysporum causes devastating diseases of more than 100 plant species. In particular, F. oxysporum f. more...

Organism:

Fusarium oxysporum; Arabidopsis thaliana; Brassica oleracea

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL19580 GPL29143 GPL29144

25 Samples

Download data: TXT

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.

Organism:

Arabidopsis thaliana; Fusarium oxysporum

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL17639 GPL24159 GPL26208

58 Samples

Download data: TXT

(Submitter supplied) Background: Cell walls (CWs) are protein-rich polysaccharide matrices essential for plant growth and environmental acclimationadaptation. The CW constitutes the first physical barrier as well as a primary source of sugars for plant microbes, such as the  vascular pathogen Fusarium oxysporum (Fo). Fo colonizes roots, advancing through the plant primary CWs towards the vasculature, where it grows causing devastation in many crops. more...

Organism:

Fusarium oxysporum; Arabidopsis thaliana

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL24159 GPL17639

52 Samples

Download data: TXT, XLSX

(Submitter supplied) Using next-generation sequencing, we sequenced transcriptomes of A. thaliana plants infected by the pathogenic and the symbiotic fungus and analyzed plant and fungal gene expression changes between pathogenic and symbiotic interactions. Infected plants were sampled at early infection stages, 12, 24, 48 and 96 HPI (hours post inoculation)

Organism:

Fusarium oxysporum; Arabidopsis thaliana

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL13222 GPL22481

29 Samples

Download data: TXT

(Submitter supplied) nox1 gene has effect on the production of H2O2 of T. guizhouense NJAU4742. In this experiment, WT, knockout mutant and overexpression mutant of nox1 gene for NJAU4742 were used to do confrantation with F. oxysporum FOC4 strain, and then the mycelum from NJAU4742 and FOC4 (before contact and after contact) were collected and used to detect the gene expression patterns in this progress by RNA-seq.

Organism:

Trichoderma guizhouense; Fusarium oxysporum

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL25398 GPL22481 GPL25399

27 Samples

Download data: XLSX

(Submitter supplied) To study whether there are differences in chromatin-mediated regulation between and within chromosomes in Fusarium oxysporum f. sp. lycopersici 4287 (FGSC9935), we determined the distribution of histone marks associated with euchromatin (H3K4me2) and facultative heterochromatin (H3K27me3) in vitro. We then determined whether these differences correlate with differences in dispensability and sequence divergence and gene expression.

Organism:

Fusarium oxysporum

Type:

Genome binding/occupancy profiling by high throughput sequencing

Platform:

GPL24159

4 Samples

Download data: BED

(Submitter supplied) Thymol (5-methyl-2-(1-methylethyl) phenol, PubChem CID: 6989) has been extensively reported to have antimicrobial activity against pathogenic microorganisms. In this study, the growth of F. oxysporum was significantly inhibited by thymol in vitro. The dry weight of F. oxysporum was decreased significantly. Thymol-induced cell membrane damage was observed at 24 hpi (hours post incubation). Therefore, the changes in the gene expression level of F. more...

Organism:

Fusarium oxysporum

Type:

Expression profiling by high throughput sequencing

Platform:

GPL24159

6 Samples

Download data: TXT

(Submitter supplied) We provide genome sequences of altogether 9 F. fujikuroi and one F. oxysporum (outgroup) strains, all isolated from rice plants in different geographical regions of the world, and searched for differences in genome structure, chromosome size, secondary metabolite production, virulence on rice, and in vitro and in planta transcriptome profiles. Despite their high relatedness on genome level, they differ significantly in their ability to infect rice, to form asexual spores (micro-and macroconidia), and to produce secondary metabolites. more...

Organism:

Fusarium oxysporum; Fusarium fujikuroi

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL22481 GPL22633

30 Samples

Download data: TXT

(Submitter supplied) Fusarium spp. are fungal pathogens of humans and plants. Fusarium oxysporum and Fusarium solani are important species isolated from infections such as onychomycosis, fungal keratitis, invasive infections, and disseminated diseases. These pathologies have a very difficult therapeutic management and poor therapeutic responses, especially in patients with disseminated infection. Little information is available regarding the molecular mechanisms responsible for antifungal resistance in these fungi. more...

Organism:

Fusarium oxysporum; Fusarium solani

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL21966 GPL21965

6 Samples

Download data: TSV

(Submitter supplied) Previous studies have demonstrated the essential role of morphogenetic regulation in Fusarium oxysporum pathogenesis, including processes such as cell-wall biogenesis, cell division and differentiation of infection-like structures. We identified three F. oxysporum genes encoding predicted transcription factors showing significant identities to Magnaporthe oryzae Con7p, Con7-1, plus two identical copies of Con7-2. more...

Organism:

Fusarium oxysporum

Type:

Expression profiling by array

Platform:

GPL15804

6 Samples

Download data: TXT

(Submitter supplied) Soilborne fungal pathogens cause devastating yield losses, are highly persistent and difficult to control. To culminate infection, these organisms must cope with limited availability of iron. Here we show that the bZIP protein HapX functions as a key regulator of iron homeostasis and virulence in the vascular wilt fungus Fusarium oxysporum. Deletion of hapX does not affect iron uptake, but causes derepression of genes involved in iron-consuming pathways, leading to impaired growth under iron-depleted conditions. more...

Organism:

Fusarium oxysporum

Type:

Expression profiling by array

Platform:

GPL15804

12 Samples

Download data: TXT

(Submitter supplied) Mycotoxins are secondary metabolites which are produced by numerous fungi and pose a continuous challenge to the safety and quality of food commodities in South Africa. These toxins have toxicologically relevant effects on humans and animals that eat contaminated foods. In this study, a diagnostic DNA microarray was developed for the identification of the most common food-borne fungi, as well as the genes leading to toxin production. more...

Organism:

Claviceps purpurea; Alternaria alternata; Aspergillus multicolor; Fusarium subglutinans; Fusarium cerealis; Penicillium viridicatum; Penicillium corylophilum; Fusarium verticillioides; Talaromyces rugulosus; Fusarium solani; Stenocarpella maydis; Fusarium incarnatum; Aspergillus amstelodami; Aspergillus parasiticus; Fusarium sambucinum; Curvularia lunata; Fusarium; Talaromyces funiculosus; Bipolaris sorokiniana; Fusarium decemcellulare; Drechslera sp.; Aspergillus chevalieri; Aspergillus; Aspergillus clavatus; Fusarium oxysporum; Fusarium acuminatum; Talaromyces islandicus; Aspergillus versicolor; Penicillium fellutanum; Fusarium globosum; Pseudopithomyces chartarum; Aspergillus niger; Penicillium; Fusarium sporotrichioides; Fusarium graminearum; Penicillium expansum; Fusarium sp.; Fusarium avenaceum; Penicillium italicum; Aspergillus carbonarius; Fusarium anthophilum; Fusarium equiseti

Type:

Expression profiling by array; Other

Platform:

GPL9730

120 Samples

Download data: GPR, TXT

(Submitter supplied) Microarrays have become established tools for describing microbial systems, however the assessment of expression profiles for environmental microbial communities still presents unique challenges. Notably, the concentration of particular transcripts are likely very dilute relative to the pool of total RNA, and PCR-based amplification strategies are vulnerable to amplification biases and the appropriate primer selection. more...

Organism:

Pleurotus eryngii; Schizophyllum commune; Trametes cinnabarina; Gelatoporia subvermispora; Trametes coccinea; Neurospora crassa; Pleurotus ostreatus; Heterobasidion annosum; synthetic construct; unidentified; Fusarium proliferatum; Cryphonectria parasitica; Phlebia radiata; Trametes versicolor; Coriolopsis gallica; Dichomitus squalens; Phanerodontia chrysosporium; Agaricus bisporus; Lentinula edodes; Fusarium oxysporum; Botrytis cinerea

Type:

Expression profiling by array

Platform:

GPL7797

68 Samples

Download data: TXT

(Submitter supplied) Fusarium oxysporum f.sp. lycopersici expression during nutrient starvation. 6 repeats of each nitrogen and carbon starvation. Data cited in: Molecular Plant Pathology Volume 6, Issue 4, Page 459-470, Jul 2005 Keywords: parallel sample

Organism:

Fusarium oxysporum

Type:

Expression profiling by array

Platform:

GPL960

12 Samples

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(Submitter supplied) Fusarium oxysporum microarray Arrays of this design have barcodes that begin with 16036355 or 2536355. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. more...

Organism:

Fusarium oxysporum

2 Series

18 Samples

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