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Items: 20

1.

De novo assembly and annotation of the singing mouse genome

(Submitter supplied) We sequenced the genome and transcriptome of Alston’s singing mouse (Scotinomys teguina), an emerging model for social cognition and vocal communication. Using PromethION, Illumina, and PacBio sequencing, we produced an annotated genome and transcriptome, which were validated using gene expression and functional enrichment analyses. To assess the usefulness of our assemblies, we performed single nuclei sequencing on cells of the orofacial motor cortex, a brain region implicated in song coordination, identifying 12 cell types.
Organism:
Scotinomys teguina
Type:
Expression profiling by high throughput sequencing; Other
Platforms:
GPL32645 GPL32646
17 Samples
Download data: FASTA, GTF
Series
Accession:
GSE212957
ID:
200212957
2.

Illumina HiSeq 4000 (Scotinomys teguina)

Organism:
Scotinomys teguina
1 Series
14 Samples
Download data
Platform
Accession:
GPL32646
ID:
100032646
3.

Illumina NovaSeq 6000 (Scotinomys teguina)

Organism:
Scotinomys teguina
1 Series
3 Samples
Download data
Platform
Accession:
GPL32645
ID:
100032645
4.

Adult female liver (NYU, RNA)

Organism:
Scotinomys teguina
Source name:
Adult female liver
Platform:
GPL32646
Series:
GSE212957
Download data
Sample
Accession:
GSM6564500
ID:
306564500
5.

Adult male 2 liver (NYU, RNA)

Organism:
Scotinomys teguina
Source name:
Adult male liver
Platform:
GPL32646
Series:
GSE212957
Download data
Sample
Accession:
GSM6564499
ID:
306564499
6.

Adult male 1 liver (NYU, RNA)

Organism:
Scotinomys teguina
Source name:
Adult male liver
Platform:
GPL32646
Series:
GSE212957
Download data
Sample
Accession:
GSM6564498
ID:
306564498
7.

Adult female brain2 (NYU, RNA)

Organism:
Scotinomys teguina
Source name:
Adult female forebrain
Platform:
GPL32646
Series:
GSE212957
Download data
Sample
Accession:
GSM6564497
ID:
306564497
8.

Adult male 2 brain2 (NYU, RNA)

Organism:
Scotinomys teguina
Source name:
Adult male forebrain
Platform:
GPL32646
Series:
GSE212957
Download data
Sample
Accession:
GSM6564496
ID:
306564496
9.

Adult male 1 brain2 (NYU, RNA)

Organism:
Scotinomys teguina
Source name:
Adult male forebrain
Platform:
GPL32646
Series:
GSE212957
Download data
Sample
Accession:
GSM6564495
ID:
306564495
10.

Adult female brain1 (NYU, RNA)

Organism:
Scotinomys teguina
Source name:
Adult female forebrain
Platform:
GPL32646
Series:
GSE212957
Download data
Sample
Accession:
GSM6564494
ID:
306564494
11.

Adult male 2 brain1 (NYU, RNA)

Organism:
Scotinomys teguina
Source name:
Adult male forebrain
Platform:
GPL32646
Series:
GSE212957
Download data
Sample
Accession:
GSM6564493
ID:
306564493
12.

Adult male 1 brain1 (NYU, RNA)

Organism:
Scotinomys teguina
Source name:
Adult male forebrain
Platform:
GPL32646
Series:
GSE212957
Download data
Sample
Accession:
GSM6564492
ID:
306564492
13.

Adult male liver (UT, RNA)

Organism:
Scotinomys teguina
Source name:
Adult male liver
Platform:
GPL32646
Series:
GSE212957
Download data
Sample
Accession:
GSM6564491
ID:
306564491
14.

Adult male gonads (UT, RNA)

Organism:
Scotinomys teguina
Source name:
Adult male gonads
Platform:
GPL32646
Series:
GSE212957
Download data
Sample
Accession:
GSM6564490
ID:
306564490
15.

Adult male skeletal muscle (UT, RNA)

Organism:
Scotinomys teguina
Source name:
Adult male skeletal muscle
Platform:
GPL32646
Series:
GSE212957
Download data
Sample
Accession:
GSM6564489
ID:
306564489
16.

Adult male forebrain (UT, RNA)

Organism:
Scotinomys teguina
Source name:
Adult male forebrain
Platform:
GPL32646
Series:
GSE212957
Download data
Sample
Accession:
GSM6564488
ID:
306564488
17.

Adult male liver for Illumina

Organism:
Scotinomys teguina
Source name:
Adult male liver
Platform:
GPL32646
Series:
GSE212957
Download data
Sample
Accession:
GSM6564487
ID:
306564487
18.

Adult male forebrain for 10X snRNAseq

Organism:
Scotinomys teguina
Source name:
Adult male forebrain
Platform:
GPL32645
Series:
GSE212957
Download data
Sample
Accession:
GSM6564501
ID:
306564501
19.

Adult male liver for Pacbio

Organism:
Scotinomys teguina
Source name:
Adult male liver
Platform:
GPL32645
Series:
GSE212957
Download data
Sample
Accession:
GSM6564486
ID:
306564486
20.

Adult male liver for Promethion

Organism:
Scotinomys teguina
Source name:
Adult male liver
Platform:
GPL32645
Series:
GSE212957
Download data
Sample
Accession:
GSM6564485
ID:
306564485
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Supplemental Content

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