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Items: 1 to 20 of 107

1.

Diverse CGG binding proteins across eukaryotes produced by independent domestications of hAT transposons

(Submitter supplied) The human transcription factor (TF) CGGBP1 (“CGG Binding Protein”) is conserved only in amniotes, and is believed to derive from the zf-BED and Hermes transposase DNA-binding domains (DBDs) of a hAT DNA transposon. Here, we examine the DNA binding preferences of a wide variety of metazoan CGGBP1-like TFs with this bipartite domain using PBM experiments. The derived motifs are available at ...
Organism:
Petromyzon marinus; Acipenser ruthenus; Gallus gallus; Erpetoichthys calabaricus; Rhizophagus irregularis; Paramormyrops kingsleyae; Aedes aegypti; Culex quinquefasciatus; Latimeria chalumnae; Cyprinus carpio; synthetic construct; Hucho hucho; Amphiprion ocellaris; Labeo rohita; Mola mola; Sphaeramia orbicularis; Anabarilius grahami; Acyrthosiphon pisum; Salmo salar; Fundulus heteroclitus; Sparus aurata; Chrysemys picta; Austrofundulus limnaeus; Anabas testudineus; Amphiprion percula; Salarias fasciatus; Locusta migratoria; Crocodylus porosus; Homo sapiens; Rhodnius prolixus; Rhipicephalus appendiculatus; Kryptolebias marmoratus; Nematostella vectensis; Acanthochromis polyacanthus; Hippocampus comes; Hofstenia miamia
Type:
Other
Platform:
GPL11260
258 Samples
Download data: TXT
Series
Accession:
GSE157085
ID:
200157085
2.

Sociality and DNA methylation are not evolutionary dependent

(Submitter supplied) DNA methylation is an important chromatin modification that is necessary for the structural integrity and proper regulation of the genome for many species. Despite its conservation across the tree of life, little is known about its contribution to complex traits. Reports that differences in DNA methylation between castes in closely related Hymenopteran insects (ants, bees and wasps) contributes to social behaviors has generated hypotheses on the role of DNA methylation in governing social behavior. more...
Organism:
Blattella germanica; Periplaneta americana; Helicoverpa zea; Aedes albopictus; Aedes atropalpus; Rhyparobia maderae; Cryptocercus garciai; Aphis craccivora; Aedes aegypti; Anopheles gambiae; Culex quinquefasciatus; Reticulitermes virginicus; Pemphigus obesinymphae; Blaptica dubia; Pemphigus populitransversus; Microplitis mediator; Chrysodeixis includens; Heliothis virescens; Copidosoma floridanum; Eublaberus posticus; Reticulitermes flavipes; Microplitis demolitor; Polistes carolina; Blattella asahinai; Acyrthosiphon pisum; Anastrepha suspensa; Aphidius ervi; Toxorhynchites amboinensis; Pemphigus populicaulis; Pyractomena borealis
Type:
Methylation profiling by high throughput sequencing
30 related Platforms
69 Samples
Download data: TXT
Series
Accession:
GSE83497
ID:
200083497
3.

Gene expression profiling of 5 pea aphid morphs

(Submitter supplied) Purpose: Identify differentially expressed genes between 5 pea aphid morphs Methods: Collected whole bodies of 30 adult aphids of each of the five pea morphs and three clones (total of 15 samples)
Organism:
Acyrthosiphon pisum
Type:
Expression profiling by high throughput sequencing
Platform:
GPL18577
15 Samples
Download data: CSV
Series
Accession:
GSE56830
ID:
200056830
4.

Phenotypic plasticity in the pea aphid Acyrthosiphon pisum

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Acyrthosiphon pisum
Type:
Non-coding RNA profiling by high throughput sequencing; Non-coding RNA profiling by array
Platforms:
GPL9994 GPL9993
10 Samples
Download data: FA, XLS
Series
Accession:
GSE20110
ID:
200020110
5.

Phenotypic plasticity in the pea aphid Acyrthosiphon pisum: miRNA sequencing

(Submitter supplied) Bioinformatic prediction, deep sequencing of microRNA and expression analysis during phenotypic plasticity in the pea aphid acyrthosiphon pisum We developed high throughput Solexa sequencing and bioinformatic analyses of the genome of the pea aphid Acyrthosiphon pisum in order to identify the first miRNAs from a hemipteran insect. By combining these methods we identified 155 miRNAs including 56 conserved and 99 new miRNAs. more...
Organism:
Acyrthosiphon pisum
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL9994
1 Sample
Download data: FA
Series
Accession:
GSE20107
ID:
200020107
6.

Phenotypic plasticity in the pea aphid Acyrthosiphon pisum: miRNA expression

(Submitter supplied) We developed high throughput Solexa sequencing and bioinformatic analyses of the genome of the pea aphid Acyrthosiphon pisum in order to identify the first miRNAs from a hemipteran insect. By combining these methods we identified 155 miRNAs including 56 conserved and 99 new miRNAs. Moreover, we investigated the regulation of these miRNAs in different alternative morphs of the pea aphid by analysing the expression of miRNAs across the switch of reproduction mode.
Organism:
Acyrthosiphon pisum
Type:
Non-coding RNA profiling by array
Platform:
GPL9993
9 Samples
Download data: XLS
Series
Accession:
GSE20106
ID:
200020106
7.

Transcriptomic and proteomic analyses of seasonal photoperiodism in the pea aphid

(Submitter supplied) Aphid adaptation to harsh winter conditions is illustrated by an alternation of their reproductive mode. Aphids detect photoperiod shortening by sensing the length of the night and switch from viviparous parthenogenesis in spring and summer, to oviparous sexual reproduction in autumn. The photoperiodic signal is transduced from the head to the reproductive tract to change the fate of the future oocytes from mitotic diploid embryogenesis to haploid formation of gametes. more...
Organism:
Acyrthosiphon pisum
Type:
Expression profiling by array
Platform:
GPL8426
24 Samples
Download data: GPR
Series
Accession:
GSE15776
ID:
200015776
8.

Common genome-wide patterns of transcript accumulation underlying the wing polyphenism and polymorphism in the pea aphid

(Submitter supplied) The pea aphid, Acyrthosiphon pisum, exhibits several environmentally cued polyphenisms, in which discrete, alternative phenotypes are produced. At low density parthenogenetic females produce unwinged female progeny, but at high density females produce progeny that develop with wings. These alternative phenotypes represent a solution to the competing demands of dispersal and reproduction. Males also develop as either winged or unwinged, but these alternatives are determined by a genetic polymorphism. more...
Organism:
Buchnera aphidicola; Escherichia coli; Acyrthosiphon pisum
Type:
Expression profiling by array
Platform:
GPL5347
24 Samples
Download data: GPR, TXT
Series
Accession:
GSE8008
ID:
200008008
9.

Effect of day-length shortening on gene expression on pea aphid heads

(Submitter supplied) Seasonal photoperiodism is responsable in aphid for the switch from asexual to sexual reproduction. In order to identify genes regulating the photoperiodic response, a cDNA microarray from the pea aphid was used to compare RNA populations from short- and long-day reared aphids. Analyses revealed that 64 different transcripts were significantly regulated, with a strong biological signature for cuticular proteins and proteins involved in cellular signalling or signal transduction. more...
Organism:
Acyrthosiphon pisum
Type:
Expression profiling by array
Platform:
GPL4580
12 Samples
Download data
Series
Accession:
GSE6363
ID:
200006363
10.

A dual-genome microarray for the pea aphid, and its obligate bacterial symbiont

(Submitter supplied) Background: The best studied insect-symbiont system is that of aphids and their primary bacterial endosymbiont Buchnera aphidicola. Buchnera inhabits specialized host cells called bacteriocytes, provides nutrients to the aphid and has co-speciated with its aphid hosts for the past 150 million years. We have used a single microarray to examine gene expression in the pea aphid, Acyrthosiphon pisum, and its resident Buchnera. more...
Organism:
Buchnera aphidicola; Acyrthosiphon pisum
Type:
Expression profiling by array
Platform:
GPL2889
1 Sample
Download data: CSV
Series
Accession:
GSE3742
ID:
200003742
11.

Illumina NextSeq 500 (Acyrthosiphon pisum)

Organism:
Acyrthosiphon pisum
1 Series
1 Sample
Download data
Platform
Accession:
GPL22029
ID:
100022029
12.

Illumina HiSeq 2000 (Acyrthosiphon pisum)

Organism:
Acyrthosiphon pisum
1 Series
15 Samples
Download data
Platform
Accession:
GPL18577
ID:
100018577
13.

UMR BiO3P-INRA Acyrthosiphon pisum 0.4K miRNAs v1

(Submitter supplied) http://www.lcsciences.com/support/technology/technology.html
Organism:
Acyrthosiphon pisum
2 Series
9 Samples
Download data
Platform
Accession:
GPL9993
ID:
100009993
14.

Illumina Genome Analyzer (Acyrthosiphon pisum)

Organism:
Acyrthosiphon pisum
2 Series
1 Sample
Download data
Platform
Accession:
GPL9994
ID:
100009994
15.

Pea aphid cDNA array, INRA Rennes, 7344 spots, v2

(Submitter supplied) Corning UltraGAPS II slides (Corning, NY, USA). Spotted by a Microgrid II spotter (Biorobotics, Cambridge, UK) Protocol: cDNAs were amplified from bacterial lysates and PCR products were resuspended into 20 µl of 1.5 M betaine, 3x SSC buffer
Organism:
Acyrthosiphon pisum
1 Series
24 Samples
Download data
Platform
Accession:
GPL8426
ID:
100008426
16.

Arizona Aphid/Buchnera 1

(Submitter supplied) Dual-genome microarray for the pea aphid, Acyrthosiphon pisum, and its obligate bacterial symbiont, Buchnera aphidicola. Protocol: Genes were arranged in duplicate spots on slides, with Buchnera genes grouped into the first and second of 24 subarrays. In addition to spot duplication, the entire set was printed twice on each slide with the result that each gene was represented by four spots in total.
Organism:
Buchnera aphidicola; Escherichia coli; Acyrthosiphon pisum
1 Series
24 Samples
Download data
Platform
Accession:
GPL5347
ID:
100005347
17.

Pea aphid cDNA array, INRA Rennes, 3360 spots, v1

(Submitter supplied) Corning UltraGAPS II slides (Corning, NY, USA). Spotted by a Microgrid II spotter (Biorobotics, Cambridge, UK) Protocol: cDNAs were amplified from bacterial lysates and PCR products were resuspended into 20 µl of 1.5 M betaine, 3x SSC buffer.
Organism:
Acyrthosiphon pisum
1 Series
12 Samples
Download data
Platform
Accession:
GPL4580
ID:
100004580
18.

Acyrthosiphon pisum + Buchnera aphidicola dual genome array

(Submitter supplied) Dual-genome microarray for the pea aphid, Acyrthosiphon pisum, and its obligate bacterial symbiont, Buchnera aphidicola The platform table is condensed to show each GENE on the array. The full array table, showing all spots, is linked as a supplementary file (see download link below). Protocol: Genes were arranged in duplicate spots on slides, with Buchnera genes grouped into the first and second of 24 subarrays. more...
Organism:
Buchnera aphidicola; Acyrthosiphon pisum
1 Series
1 Sample
Download data: TXT
Platform
Accession:
GPL2889
ID:
100002889
19.

pTH15793.2_HK_8mer

Organism:
Acyrthosiphon pisum
Source name:
Acyrthosiphon_pisum_7029_J9LE14_cggbp1-like:2-294,HK design
Platform:
GPL11260
Series:
GSE157085
Download data: TXT
Sample
Accession:
GSM4752510
ID:
304752510
20.

pTH15793.1_ME_8mer

Organism:
Acyrthosiphon pisum
Source name:
Acyrthosiphon_pisum_7029_J9LE14_cggbp1-like:2-294,ME design
Platform:
GPL11260
Series:
GSE157085
Download data: TXT
Sample
Accession:
GSM4752509
ID:
304752509
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