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Items: 1 to 20 of 84

1.

Ancient vertebrate dermal armor evolved from trunk neural crest

(Submitter supplied) Bone is an evolutionary novelty of vertebrates, likely to have first emerged as part of ancestral dermal armor that consisted of osteogenic and odontogenic components. Whether these early vertebrate structures arose from mesoderm or neural crest cells has been a matter of considerable debate. To examine the developmental origin of the bony part of the dermal armor, we have performed in vivo lineage tracing in the sterlet sturgeon, a representative of non-teleost ray-finned fish that has retained an extensive postcranial dermal skeleton. more...
Organism:
Acipenser ruthenus; Danio rerio; Polypterus senegalus
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL33508 GPL18413 GPL33507
14 Samples
Download data: TXT
Series
Accession:
GSE235280
ID:
200235280
2.

Comparison of RNA localization during oogenesis within Acipenser ruthenus and Xenopus laevis

(Submitter supplied) This SuperSeries is composed of the SubSeries listed below.
Organism:
Acipenser ruthenus; Xenopus laevis
Type:
Expression profiling by high throughput sequencing
Platforms:
GPL21248 GPL26119
94 Samples
Download data
Series
Accession:
GSE211416
ID:
200211416
3.

Comparison of RNA localization during oogenesis within Acipenser ruthenus and Xenopus laevis [Acipenser ruthenus]

(Submitter supplied) In this study we analyzed the spatial and temporal localization of maternal transcripts during oogenesis in Acipenser ruthenus. The occurrence of transcript asymmetry in A. ruthenus has been described at a global level only in matured eggs. However not much is known about the asymmetry during oogenesis. In this study we assessed the temporal establishment of the transcript localization at a global level for A. more...
Organism:
Acipenser ruthenus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL26119
35 Samples
Download data: FASTA, XLSX
Series
Accession:
GSE211412
ID:
200211412
4.

Transcriptomic analysis of sturgeon embryos in response to chemically induced DNA damage

(Submitter supplied) In this study we show that the exposure to genotoxicants (10 nM camptothecin and 20 µM Olaparib) affects embryo development in a stage-dependent manner with early stages being the most sensitive to DNA damage. The transcriptomic and proteomic patterns changed significantly after exposure to genotoxicants compared to the control. Camptothecin and Olaparib downregulated metabolic pathways and developmental processes. more...
Organism:
Acipenser ruthenus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL26119
16 Samples
Download data: CSV
Series
Accession:
GSE190524
ID:
200190524
5.

Diverse CGG binding proteins across eukaryotes produced by independent domestications of hAT transposons

(Submitter supplied) The human transcription factor (TF) CGGBP1 (“CGG Binding Protein”) is conserved only in amniotes, and is believed to derive from the zf-BED and Hermes transposase DNA-binding domains (DBDs) of a hAT DNA transposon. Here, we examine the DNA binding preferences of a wide variety of metazoan CGGBP1-like TFs with this bipartite domain using PBM experiments. The derived motifs are available at ...
Organism:
Aedes aegypti; Culex quinquefasciatus; Latimeria chalumnae; Cyprinus carpio; synthetic construct; Hucho hucho; Amphiprion ocellaris; Labeo rohita; Mola mola; Sphaeramia orbicularis; Anabarilius grahami; Petromyzon marinus; Acipenser ruthenus; Gallus gallus; Erpetoichthys calabaricus; Rhizophagus irregularis; Paramormyrops kingsleyae; Locusta migratoria; Crocodylus porosus; Homo sapiens; Rhodnius prolixus; Rhipicephalus appendiculatus; Kryptolebias marmoratus; Nematostella vectensis; Acanthochromis polyacanthus; Hippocampus comes; Hofstenia miamia; Acyrthosiphon pisum; Salmo salar; Fundulus heteroclitus; Sparus aurata; Chrysemys picta; Austrofundulus limnaeus; Anabas testudineus; Amphiprion percula; Salarias fasciatus
Type:
Other
Platform:
GPL11260
258 Samples
Download data: TXT
Series
Accession:
GSE157085
ID:
200157085
6.

RNA_Seq analysis of localization along animal-vegetal axis of Acipenser ruthenus

(Submitter supplied) We performed cryosectioning of oocytes along the animal-vegetal axis (first developmental axis, section A (first animal) to section E (last vegetal), followed by RNA-Seq to determine the localization profiles of coding and noncoding RNAs. The method allowed for a complete view on RNA localization. We found that nearly all RNAs are localized, but only a small percentage is actively transported during oogenesis.
Organism:
Acipenser ruthenus
Type:
Expression profiling by high throughput sequencing
Platform:
GPL26119
15 Samples
Download data: FASTA, TXT
Series
Accession:
GSE125819
ID:
200125819
7.

Illumina HiSeq 2500 (Acipenser ruthenus)

Organism:
Acipenser ruthenus
1 Series
6 Samples
Download data
Platform
Accession:
GPL33508
ID:
100033508
8.

Illumina NextSeq 500 (Acipenser ruthenus)

Organism:
Acipenser ruthenus
4 Series
66 Samples
Download data
Platform
Accession:
GPL26119
ID:
100026119
9.

Sterlet sturgeon scute 68mm, replicate two

Organism:
Acipenser ruthenus
Source name:
cells of scute
Platform:
GPL33508
Series:
GSE235280
Download data
Sample
Accession:
GSM7498270
ID:
307498270
10.

Sterlet sturgeon scute 68mm, replicate one

Organism:
Acipenser ruthenus
Source name:
cells of scute
Platform:
GPL33508
Series:
GSE235280
Download data
Sample
Accession:
GSM7498269
ID:
307498269
11.

Sterlet sturgeon scute 26mm, replicate two

Organism:
Acipenser ruthenus
Source name:
cells of scute
Platform:
GPL33508
Series:
GSE235280
Download data
Sample
Accession:
GSM7498268
ID:
307498268
12.

Sterlet sturgeon scute 26mm, replicate one

Organism:
Acipenser ruthenus
Source name:
cells of scute
Platform:
GPL33508
Series:
GSE235280
Download data
Sample
Accession:
GSM7498267
ID:
307498267
13.

Sterlet sturgeon scute 22mm, replicate two

Organism:
Acipenser ruthenus
Source name:
cells of scute
Platform:
GPL33508
Series:
GSE235280
Download data
Sample
Accession:
GSM7498266
ID:
307498266
14.

Sterlet sturgeon scute 22mm, replicate one

Organism:
Acipenser ruthenus
Source name:
cells of scute
Platform:
GPL33508
Series:
GSE235280
Download data
Sample
Accession:
GSM7498265
ID:
307498265
15.

section E small oocyte rep 8 [A. ruthenus]

Organism:
Acipenser ruthenus
Source name:
oocyte
Platform:
GPL26119
Series:
GSE211412 GSE211416
Download data
Sample
Accession:
GSM6469698
ID:
306469698
16.

section D small oocyte rep 8 [A. ruthenus]

Organism:
Acipenser ruthenus
Source name:
oocyte
Platform:
GPL26119
Series:
GSE211412 GSE211416
Download data
Sample
Accession:
GSM6469697
ID:
306469697
17.

section C small oocyte rep 8 [A. ruthenus]

Organism:
Acipenser ruthenus
Source name:
oocyte
Platform:
GPL26119
Series:
GSE211412 GSE211416
Download data
Sample
Accession:
GSM6469696
ID:
306469696
18.

section B small oocyte rep 8 [A. ruthenus]

Organism:
Acipenser ruthenus
Source name:
oocyte
Platform:
GPL26119
Series:
GSE211412 GSE211416
Download data
Sample
Accession:
GSM6469695
ID:
306469695
19.

section A small oocyte rep 8 [A. ruthenus]

Organism:
Acipenser ruthenus
Source name:
oocyte
Platform:
GPL26119
Series:
GSE211412 GSE211416
Download data
Sample
Accession:
GSM6469694
ID:
306469694
20.

section E small oocyte rep 7 [A. ruthenus]

Organism:
Acipenser ruthenus
Source name:
oocyte
Platform:
GPL26119
Series:
GSE211412 GSE211416
Download data
Sample
Accession:
GSM6469693
ID:
306469693
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db=gds|term=txid7906[Organism:noexp]|query=1|qty=40|blobid=MCID_6673b7f08c5d4760e2938d7e|ismultiple=true|min_list=5|max_list=20|def_tree=20|def_list=|def_view=|url=/Taxonomy/backend/subset.cgi?|trace_url=/stat?
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