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Items: 1 to 20 of 43

1.

RNA-Sequencing analysis of reproduction/meiosis in Selaginella moellendorffii

(Submitter supplied) To investigate global gene expression during meiosis in S. moellendorfii, digital gene-expression profiling of a series of sporangia at different developmental stages was performed by Illumina HiSeq™ 2000 sequencing platforms, with young leaves being used as a control. The samples were collected from South Mountain, Chongqing (29°33'44.18"N; 106°37'35.62"E) and stored in RNAlater solution. Total RNAs were extracted using the TRIzol solution. more...
Organism:
Selaginella moellendorffii
Type:
Expression profiling by high throughput sequencing
Platform:
GPL19601
7 Samples
Download data: FA, TXT
Series
Accession:
GSE83783
ID:
200083783
2.

Comparative RNA-seq data on Selaginella moellendorffii organs

(Submitter supplied) RNA-seq expression data was generated for root, shoot, rhizophore, and leaf of S. moellendorffii.
Organism:
Selaginella moellendorffii
Type:
Expression profiling by high throughput sequencing
Platform:
GPL23399
8 Samples
Download data: XLSX
Series
Accession:
GSE123120
ID:
200123120
3.

Conservation and divergence of small RNA pathways in vascular plants revealed by small RNA analyses in lycophytes and ferns

(Submitter supplied) Pathways underlying miRNA biogenesis, degradation, and activity were established early in land plant evolution, but the 24-nt siRNA pathway that guides DNA methylation was incomplete in early land plants, especially lycophytes. We show that the functional diversification of key gene families such as DICER-LIKE and ARGONAUTE (AGO) as observed in angiosperms occurred early in land plants followed by parallel expansion of the AGO family in ferns and angiosperms. more...
Organism:
Microlepia platyphylla; Salvinia molesta; Selaginella uncinata; Psilotum nudum; Cibotium barometz; Vandenboschia striata; Asplenium nidus; Salvinia cucullata; Azolla caroliniana; Palhinhaea cernua; Selaginella moellendorffii; Plenasium vachellii; Microsorum cuspidatum; Equisetum ramosissimum; Cyrtomium fortunei; Angiopteris fokiensis; Diplopterygium chinense; Pteris vittata; Lygodium japonicum; Odontosoria chinensis; Alsophila spinulosa; Diplazium esculentum; Ophioglossum vulgatum; Isoetes sinensis; Dicranopteris pedata
Type:
Non-coding RNA profiling by high throughput sequencing
25 related Platforms
26 Samples
Download data: FASTA
Series
Accession:
GSE98408
ID:
200098408
4.

Conserved Molecular Program for Root Development in Diverse Plants

(Submitter supplied) We define genome-wide temporal expression patterns of root development genes in seven vascular plants, enabling a detailed comparative analysis of the molecular development of a single organ across diverse species.
Organism:
Glycine max; Cucumis sativus; Arabidopsis thaliana; Solanum lycopersicum; Selaginella moellendorffii; Zea mays; Oryza sativa
Type:
Expression profiling by high throughput sequencing
7 related Platforms
60 Samples
Download data: CSV
Series
Accession:
GSE64665
ID:
200064665
5.

UV-B regulation of microRNAs in maize

(Submitter supplied) Differential expression of microRNAs was studied in maize leaves after an 8-h-exposure under UV-B light. As a control, plants were kept in the greenhouse in the absence of UV-B
Organism:
Pinus taeda; Arabidopsis thaliana; Solanum lycopersicum; Sorghum bicolor; Vitis vinifera; Physcomitrium patens; Triticum aestivum; Zea mays; Populus trichocarpa; Glycine max; Medicago truncatula; Selaginella moellendorffii; Gossypium hirsutum; Brassica napus; Oryza sativa; Saccharum officinarum
Type:
Non-coding RNA profiling by array
Platform:
GPL9858
2 Samples
Download data: TXT
Series
Accession:
GSE19768
ID:
200019768
6.

Genome-wide evolutionary analysis of eukaryotic DNA methylation

(Submitter supplied) Eukaryotic cytosine methylation represses transposable elements, but also occurs in bodies of active genes. The extent to which these processes are conserved is unclear, and little is known about methylation outside of mammals, Arabidopsis thaliana, and Neurospora crassa. Utilizing deep bisulfite sequencing, we have quantified DNA methylation in five plant, seven animal, and five fungal genomes. We find that gene body methylation is conserved between plants and animals, whereas selective methylation of transposons has evolved independently in the vertebrate lineage. more...
Organism:
Oryza sativa; Tribolium castaneum; Nematostella vectensis; Ciona intestinalis; Tetraodon nigroviridis; Chlorella variabilis; Volvox carteri; Coprinopsis cinerea; Bombyx mori; Physcomitrium patens; Phycomyces blakesleeanus; Drosophila melanogaster; Apis mellifera; Laccaria bicolor; Uncinocarpus reesii; Selaginella moellendorffii; Postia placenta
Type:
Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing
17 related Platforms
33 Samples
Download data: GFF, TXT
Series
Accession:
GSE19824
ID:
200019824
7.

Small RNAs in different tissues and phloem of oilseed rape under nutrient stress conditions

(Submitter supplied) The objective of this study was to identify nutrient-responsive small RNAs in different tissues and in phloem sap of rape plants. miRNA microarrays containing all currently known plant miRNAs (Sanger miRBase versions 10.0, 10.1 and 11.0), and a set of unknown small RNAs cloned earlier from Brassica phloem sap (Bn_PsRNA) were used. The phloem, leaf and root response to nutrient deficiency were analyzed by removing either sulfate, copper or iron from the growth medium. more...
Organism:
Sorghum bicolor; Zea mays; Vitis vinifera; Physcomitrium patens; Arabidopsis thaliana; Brassica rapa; Oryza sativa; Saccharum officinarum; Triticum aestivum; Pinus taeda; Glycine max; Medicago truncatula; Selaginella moellendorffii; Populus trichocarpa; Brassica napus; Brassica oleracea
Type:
Non-coding RNA profiling by array
Platforms:
GPL9737 GPL9738 GPL9736
10 Samples
Download data: TXT
Series
Accession:
GSE20263
ID:
200020263
8.

Small RNAs from the lycopod Selaginella moellendorffii

(Submitter supplied) The small RNAs of Selaginella moellendorffii were sampled by direct pyrosequencing (454 Life Sciences). These data represent microRNAs, siRNAs, and other expressed small RNAs of ~18-~28 nts. in length. Keywords: Small RNA sequencing - high throughput
Organism:
Selaginella moellendorffii
Type:
Non-coding RNA profiling by high throughput sequencing
Platform:
GPL5014
1 Sample
Download data
Series
Accession:
GSE7320
ID:
200007320
9.

Illumina HiSeq 2500 (Selaginella moellendorffii)

Organism:
Selaginella moellendorffii
2 Series
10 Samples
Download data
Platform
Accession:
GPL23399
ID:
100023399
10.

Illumina HiSeq 2000 (Selaginella moellendorffii)

Organism:
Selaginella moellendorffii
2 Series
13 Samples
Download data
Platform
Accession:
GPL19601
ID:
100019601
11.

MiRPlants-12.0 plus 100 maize smRNAs

(Submitter supplied) LC Sciences provides a genome-wide microRNA (miRNA) expression profiling service using µParaflo® technology and proprietary probe design, which enable highly sensitive and specific direct detection of miRNAs. They have standard arrays for mature miRNA of all species available in the latest version of the Sanger miRBase database. A proprietary µParaflo® microfluidic chip is used. The microfluidic technology produces a uniform distribution of the sample solutions on the array and enhances binding reactions and stringency wash processes. more...
Organism:
Physcomitrium patens; Pinus taeda; Gossypium hirsutum; Populus trichocarpa; Arabidopsis thaliana; Brassica napus; Glycine max; Medicago truncatula; Solanum lycopersicum; Oryza sativa; Saccharum officinarum; Sorghum bicolor; Triticum aestivum; Zea mays; Vitis vinifera; Selaginella moellendorffii
1 Series
2 Samples
Download data
Platform
Accession:
GPL9858
ID:
100009858
12.

Illumina Genome Analyzer II (Selaginella moellendorffii)

Organism:
Selaginella moellendorffii
1 Series
2 Samples
Download data
Platform
Accession:
GPL9918
ID:
100009918
13.

Plants 4K miRNA LC_MRA-1038_miRNAPlants_11.0 + Bn_PsRNAs

(Submitter supplied) Plant miRNA microarray with 100% coverage of mature miRNAs listed in miRBase version 11.0 and additional custom small RNA sequences from Brassica napus phloem sap (Bn_PsRNAs) Protocol: Arrays are made based µParaflo microfluidic technology (Atactic Technologies). On the µParaflo microfluidic chip, each detection probe consists of a chemically modified nucleotide coding segment complementary to target microRNA (from miRBase, http://microrna.sanger.ac.uk/sequences/) or other RNA (control or customer defined sequences) and a spacer segment of polyethylene glycol to extend the coding segment away from the substrate. more...
Organism:
Physcomitrium patens; Pinus taeda; Populus trichocarpa; Arabidopsis thaliana; Brassica napus; Brassica rapa; Brassica oleracea; Glycine max; Medicago truncatula; Oryza sativa; Saccharum officinarum; Sorghum bicolor; Triticum aestivum; Zea mays; Vitis vinifera; Selaginella moellendorffii
1 Series
3 Samples
Download data: TXT
Platform
Accession:
GPL9738
ID:
100009738
14.

Plants 4K miRNA LC_MRA-1038_miRNAPlants_10.1 + Bn_PsRNAs

(Submitter supplied) Plant miRNA microarray with 100% coverage of mature miRNAs listed in miRBase version 10.1 and additional custom small RNA sequences from Brassica napus phloem sap (Bn_PsRNAs) Protocol: Arrays are made based µParaflo microfluidic technology (Atactic Technologies). On the µParaflo microfluidic chip, each detection probe consists of a chemically modified nucleotide coding segment complementary to target microRNA (from miRBase, http://microrna.sanger.ac.uk/sequences/) or other RNA (control or customer defined sequences) and a spacer segment of polyethylene glycol to extend the coding segment away from the substrate. more...
Organism:
Physcomitrium patens; Pinus taeda; Populus trichocarpa; Arabidopsis thaliana; Brassica napus; Brassica rapa; Brassica oleracea; Glycine max; Medicago truncatula; Oryza sativa; Saccharum officinarum; Sorghum bicolor; Triticum aestivum; Zea mays; Vitis vinifera; Selaginella moellendorffii
1 Series
4 Samples
Download data: TXT
Platform
Accession:
GPL9737
ID:
100009737
15.

Plants 4K miRNA LC_MRA-1038_miRNAPlants_10.0 + Bn_PsRNAs

(Submitter supplied) Plant miRNA microarray with 100% coverage of mature miRNAs listed in miRBase version 10.0 and additional custom small RNA sequences from Brassica napus phloem sap (Bn_PsRNAs) Protocol: Arrays are made based µParaflo microfluidic technology (Atactic Technologies). On the µParaflo microfluidic chip, each detection probe consists of a chemically modified nucleotide coding segment complementary to target microRNA (from miRBase, http://microrna.sanger.ac.uk/sequences/) or other RNA (control or customer defined sequences) and a spacer segment of polyethylene glycol to extend the coding segment away from the substrate. more...
Organism:
Physcomitrium patens; Pinus taeda; Populus trichocarpa; Arabidopsis thaliana; Brassica napus; Glycine max; Medicago truncatula; Oryza sativa; Saccharum officinarum; Sorghum bicolor; Triticum aestivum; Zea mays; Selaginella moellendorffii
1 Series
3 Samples
Download data: TXT
Platform
Accession:
GPL9736
ID:
100009736
16.

Plants 4K miRNA LC_MRA-1038_miRPlants_14

(Submitter supplied) Plant miRNA microarray with 100% coverage of mature miRNAs listed in miRBase version 14 Protocol: Arrays are made based µParaflo microfluidic technology (Atactic Technologies). On the µParaflo microfluidic chip, each detection probe consists of a chemically modified nucleotide coding segment complementary to target microRNA (from miRBase, http://microrna.sanger.ac.uk/sequences/) or other RNA (control or customer defined sequences) and a spacer segment of polyethylene glycol to extend the coding segment away from the substrate. more...
Organism:
Chlamydomonas reinhardtii; Physcomitrium patens; Pinus taeda; Gossypium hirsutum; Populus trichocarpa; Arabidopsis thaliana; Brassica napus; Brassica rapa; Brassica oleracea; Malus domestica; Glycine max; Medicago truncatula; Phaseolus vulgaris; Solanum lycopersicum; Oryza sativa; Saccharum officinarum; Sorghum bicolor; Triticum aestivum; Zea mays; Brachypodium distachyon; Vitis vinifera; Populus euphratica; Selaginella moellendorffii; Aquilegia coerulea
Download data
Platform
Accession:
GPL9344
ID:
100009344
17.

Sequenced small RNAs from the lycopod Selaginella moellendorffii

(Submitter supplied) Pyrosequencing of small RNAs from the lycopod Selaginella moellendorffii.
Organism:
Selaginella moellendorffii
1 Series
1 Sample
Download data
Platform
Accession:
GPL5014
ID:
100005014
18.

Microphyll

Organism:
Selaginella moellendorffii
Source name:
Young microphyll
Platform:
GPL19601
Series:
GSE83783
Download data: TXT
Sample
Accession:
GSM2218801
ID:
302218801
19.

Sporangium_s_6

Organism:
Selaginella moellendorffii
Source name:
Sporophyll
Platform:
GPL19601
Series:
GSE83783
Download data: TXT
Sample
Accession:
GSM2218800
ID:
302218800
20.

Sporangium_s_5

Organism:
Selaginella moellendorffii
Source name:
Sporophyll
Platform:
GPL19601
Series:
GSE83783
Download data: TXT
Sample
Accession:
GSM2218799
ID:
302218799
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